Results 41 - 60 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 5' | -54.9 | NC_005264.1 | + | 62223 | 0.66 | 0.951641 |
Target: 5'- cGCGcUCCGCGGCcgcuuCGGGGucGuCGGUa -3' miRNA: 3'- cUGC-AGGUGCCGuu---GCCUCuuC-GUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 72277 | 0.67 | 0.905289 |
Target: 5'- aGGCGUaCUggcCGGCAACgaGGAGAcGCGGUg -3' miRNA: 3'- -CUGCA-GGu--GCCGUUG--CCUCUuCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 53966 | 0.67 | 0.905289 |
Target: 5'- uGGCGUCacuuauUGGCGcCGGAacGGCGGCg -3' miRNA: 3'- -CUGCAGgu----GCCGUuGCCUcuUCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 148249 | 0.67 | 0.905289 |
Target: 5'- cGCGUUCGCGGCGGCGuuucacGGGAcagauuugcccGGCGGg -3' miRNA: 3'- cUGCAGGUGCCGUUGC------CUCU-----------UCGUCg -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 120195 | 0.67 | 0.911394 |
Target: 5'- --aGUCUgccgGCGcGCGAUGGGGGuacGCAGCg -3' miRNA: 3'- cugCAGG----UGC-CGUUGCCUCUu--CGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 13691 | 0.67 | 0.911394 |
Target: 5'- -cCG-CCAUGGCccAgGGAGAacuGGCAGCu -3' miRNA: 3'- cuGCaGGUGCCGu-UgCCUCU---UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 51838 | 0.67 | 0.917261 |
Target: 5'- uGACGggCACGGUcAUGGAGc-GCAGUa -3' miRNA: 3'- -CUGCagGUGCCGuUGCCUCuuCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 95434 | 0.67 | 0.917261 |
Target: 5'- uGC-UCUGCGGUugccCGGAGAuGCGGCg -3' miRNA: 3'- cUGcAGGUGCCGuu--GCCUCUuCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 140249 | 0.67 | 0.917261 |
Target: 5'- uGAgGUCU-CGGCGACGGuGAcGCcGCu -3' miRNA: 3'- -CUgCAGGuGCCGUUGCCuCUuCGuCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 156583 | 0.67 | 0.904665 |
Target: 5'- cGACGgcggCgACGaccGCGACGGAGGcggcaagucucgcGGCGGCc -3' miRNA: 3'- -CUGCa---GgUGC---CGUUGCCUCU-------------UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 71849 | 0.67 | 0.898948 |
Target: 5'- cGACGcgUCGCGGCGGCGGuGuuccgcgacGGCAcGCg -3' miRNA: 3'- -CUGCa-GGUGCCGUUGCCuCu--------UCGU-CG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 43191 | 0.67 | 0.898948 |
Target: 5'- cACGUCCugGGUu-CGGccguAGAGGCugAGCc -3' miRNA: 3'- cUGCAGGugCCGuuGCC----UCUUCG--UCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 162707 | 0.67 | 0.917261 |
Target: 5'- cGGCGUUaagGCGGCcGCcGGGGAGCGGg -3' miRNA: 3'- -CUGCAGg--UGCCGuUGcCUCUUCGUCg -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 79619 | 0.67 | 0.92289 |
Target: 5'- aGACGcCCACGcGCAACGGcccauaaAAGC-GCa -3' miRNA: 3'- -CUGCaGGUGC-CGUUGCCuc-----UUCGuCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 104281 | 0.67 | 0.928279 |
Target: 5'- -uUGUCUcccugaagcGCGGuCGGcCGGAGGAGguGCa -3' miRNA: 3'- cuGCAGG---------UGCC-GUU-GCCUCUUCguCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 64864 | 0.67 | 0.92289 |
Target: 5'- --aGUCCGgGGCug-GGAGAuugcccgcaaGGCGGCg -3' miRNA: 3'- cugCAGGUgCCGuugCCUCU----------UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 83685 | 0.67 | 0.930367 |
Target: 5'- --aGUCUACcGCGaaaagaaccagaaccACGGAGAAGgGGCa -3' miRNA: 3'- cugCAGGUGcCGU---------------UGCCUCUUCgUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 102235 | 0.67 | 0.928279 |
Target: 5'- -cCGgcugCCGCGGCAuacGAGAAGgGGCu -3' miRNA: 3'- cuGCa---GGUGCCGUugcCUCUUCgUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 26360 | 0.67 | 0.898948 |
Target: 5'- uGGCGUUC-CGGCcguauGACGaGAGGAGUcGCg -3' miRNA: 3'- -CUGCAGGuGCCG-----UUGC-CUCUUCGuCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 18557 | 0.67 | 0.917261 |
Target: 5'- cGGCGUCagucggaGCGGCAuccgcCGGcccaAGGCAGCg -3' miRNA: 3'- -CUGCAGg------UGCCGUu----GCCuc--UUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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