miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 30492 0.66 0.947441
Target:  5'- uGACGUaCA-GGUAGCGaggccauugcGGGAAGCGGCu -3'
miRNA:   3'- -CUGCAgGUgCCGUUGC----------CUCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 30615 0.74 0.578493
Target:  5'- cGACGgCgGCGGCGACGGAuccgcgcGCAGCg -3'
miRNA:   3'- -CUGCaGgUGCCGUUGCCUcuu----CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 33713 0.66 0.943007
Target:  5'- cGCGUCUGCGcGUAgaaacccugaucAgGGAGGAGCuGCu -3'
miRNA:   3'- cUGCAGGUGC-CGU------------UgCCUCUUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 33850 0.69 0.840212
Target:  5'- cGCG-CCGCGGCAGagcugaagaacgUGGAgcguccgcucGAGGCGGCg -3'
miRNA:   3'- cUGCaGGUGCCGUU------------GCCU----------CUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 34493 0.72 0.670541
Target:  5'- gGACGUUCgGCGGgAAUGG-GggGCGGUg -3'
miRNA:   3'- -CUGCAGG-UGCCgUUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 36448 0.69 0.840212
Target:  5'- aGACGacuugccucUCCuCGGCGAauccaaGGAGcAGCGGCa -3'
miRNA:   3'- -CUGC---------AGGuGCCGUUg-----CCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 37028 0.68 0.878545
Target:  5'- uACGUCCA-GGCuccguGCGGGGGAcaCGGCa -3'
miRNA:   3'- cUGCAGGUgCCGu----UGCCUCUUc-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 37087 0.66 0.943007
Target:  5'- cGACG-CgGCGGCAGuucCGGGGA--CGGCg -3'
miRNA:   3'- -CUGCaGgUGCCGUU---GCCUCUucGUCG- -5'
24349 5' -54.9 NC_005264.1 + 37556 0.67 0.904665
Target:  5'- cGACGgcggCgACGaccGCGACGGAGGcggcaagucucgcGGCGGCc -3'
miRNA:   3'- -CUGCa---GgUGC---CGUUGCCUCU-------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 37933 0.69 0.848285
Target:  5'- cGugGUCUuuaugauaGGCcAUGGGGggGCGGUu -3'
miRNA:   3'- -CugCAGGug------CCGuUGCCUCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 38255 0.66 0.931908
Target:  5'- -cUGUCCGCGGUGcuguCGGuGAcgucagucccggacGGCGGCg -3'
miRNA:   3'- cuGCAGGUGCCGUu---GCCuCU--------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 39214 0.69 0.823503
Target:  5'- uACGccgCCGCGGCGcugGCGGGGAGGgccuGCg -3'
miRNA:   3'- cUGCa--GGUGCCGU---UGCCUCUUCgu--CG- -5'
24349 5' -54.9 NC_005264.1 + 42948 0.7 0.806095
Target:  5'- uACGUCCgggcGCGGCAAcgccuCGGAGggGgaaaGGCc -3'
miRNA:   3'- cUGCAGG----UGCCGUU-----GCCUCuuCg---UCG- -5'
24349 5' -54.9 NC_005264.1 + 43191 0.67 0.898948
Target:  5'- cACGUCCugGGUu-CGGccguAGAGGCugAGCc -3'
miRNA:   3'- cUGCAGGugCCGuuGCC----UCUUCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 43400 0.66 0.947441
Target:  5'- gGGCGgCCugGGCAGC-GAGAucgcccgccAGCcGCg -3'
miRNA:   3'- -CUGCaGGugCCGUUGcCUCU---------UCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 43681 0.67 0.917261
Target:  5'- cGGCGUUaagGCGGCcGCcGGGGAGCGGg -3'
miRNA:   3'- -CUGCAGg--UGCCGuUGcCUCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 45150 0.69 0.814883
Target:  5'- aGGCG-CCACGacGCGGaggcaGGAGAgcgcGGCAGCg -3'
miRNA:   3'- -CUGCaGGUGC--CGUUg----CCUCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 45518 0.67 0.921227
Target:  5'- gGACGacCCGCGcacgcuucucagucGCAcGCGGAGA-GCGGCa -3'
miRNA:   3'- -CUGCa-GGUGC--------------CGU-UGCCUCUuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 45902 0.69 0.856161
Target:  5'- gGGCGgCCAU--CGACGGAGccGAGCAGCu -3'
miRNA:   3'- -CUGCaGGUGccGUUGCCUC--UUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 47915 0.66 0.933427
Target:  5'- cACGUgugcCCGCGGagccuuauCGACGGAGAA-CGGCu -3'
miRNA:   3'- cUGCA----GGUGCC--------GUUGCCUCUUcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.