miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 14941 0.69 0.840212
Target:  5'- aGGCGUCUacGCGGCAGCcGAccugGAGGCAucuGCa -3'
miRNA:   3'- -CUGCAGG--UGCCGUUGcCU----CUUCGU---CG- -5'
24349 5' -54.9 NC_005264.1 + 16198 0.71 0.730843
Target:  5'- uGCGUCUAcCGGaCAACGGGGGAcGCGccGCg -3'
miRNA:   3'- cUGCAGGU-GCC-GUUGCCUCUU-CGU--CG- -5'
24349 5' -54.9 NC_005264.1 + 16477 0.67 0.905289
Target:  5'- cGACGcagCCGCGGUggccuGCGGGgucGAGGCAcGCc -3'
miRNA:   3'- -CUGCa--GGUGCCGu----UGCCU---CUUCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 16562 0.68 0.892375
Target:  5'- cGCGguggGCGGCGcCGGGGcGGCGGCg -3'
miRNA:   3'- cUGCagg-UGCCGUuGCCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 16622 0.71 0.717971
Target:  5'- cGACG-CCGCGGCGAUuaucaucuuaggguGGAGGacGGUAGUa -3'
miRNA:   3'- -CUGCaGGUGCCGUUG--------------CCUCU--UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 17340 0.7 0.778819
Target:  5'- gGACGucugcagugccuUCCGCGGCAGCuGGc--GGCGGCg -3'
miRNA:   3'- -CUGC------------AGGUGCCGUUG-CCucuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 17758 0.68 0.878545
Target:  5'- --aGUUCGCGGCAA-GGAG-AGCuGCc -3'
miRNA:   3'- cugCAGGUGCCGUUgCCUCuUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 18554 0.7 0.80963
Target:  5'- aGACGUaCCccuguuugcgcGCGGC-ACGGAGAacucggugucggugcGGUAGCa -3'
miRNA:   3'- -CUGCA-GG-----------UGCCGuUGCCUCU---------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 18557 0.67 0.917261
Target:  5'- cGGCGUCagucggaGCGGCAuccgcCGGcccaAGGCAGCg -3'
miRNA:   3'- -CUGCAGg------UGCCGUu----GCCuc--UUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 19099 0.68 0.892375
Target:  5'- gGACugcaCCGCGGCGgcGCGGAGAcgAGCAc- -3'
miRNA:   3'- -CUGca--GGUGCCGU--UGCCUCU--UCGUcg -5'
24349 5' -54.9 NC_005264.1 + 22206 0.7 0.788055
Target:  5'- uGGCGUgCGCGGCAAgUGGAGucGUcGCc -3'
miRNA:   3'- -CUGCAgGUGCCGUU-GCCUCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 24155 0.66 0.938336
Target:  5'- -cCGUCgGCcuGGUAGCuGuGAAGCGGCa -3'
miRNA:   3'- cuGCAGgUG--CCGUUGcCuCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 25157 0.69 0.856161
Target:  5'- cGCGUuuGCGGCAG-GGGGuGGCGGg -3'
miRNA:   3'- cUGCAggUGCCGUUgCCUCuUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 25614 0.77 0.415986
Target:  5'- cGGCGUUgcggaaCACGGCGGCGGuGggGCcGCg -3'
miRNA:   3'- -CUGCAG------GUGCCGUUGCCuCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 25732 0.68 0.863834
Target:  5'- uGCGUacuCGGUcGCGGAGAGGcCAGUg -3'
miRNA:   3'- cUGCAgguGCCGuUGCCUCUUC-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 26360 0.67 0.898948
Target:  5'- uGGCGUUC-CGGCcguauGACGaGAGGAGUcGCg -3'
miRNA:   3'- -CUGCAGGuGCCG-----UUGC-CUCUUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 27823 0.66 0.933427
Target:  5'- -cUGUCUGC--CGACGGAGggGCAGa -3'
miRNA:   3'- cuGCAGGUGccGUUGCCUCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 29026 0.68 0.871298
Target:  5'- --gGUCCAUGGCGcggaaauacuggAUGGAGGAGUuGGCc -3'
miRNA:   3'- cugCAGGUGCCGU------------UGCCUCUUCG-UCG- -5'
24349 5' -54.9 NC_005264.1 + 29225 0.67 0.928279
Target:  5'- cGAUGgggagCCAgCGGUcgaggagcacAGCGGAGAcuGCGGCg -3'
miRNA:   3'- -CUGCa----GGU-GCCG----------UUGCCUCUu-CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 30388 0.74 0.587645
Target:  5'- cGCGUCUcggcgGCGGCGgucgcgcgccgguGCGGAGAGcuGCGGCg -3'
miRNA:   3'- cUGCAGG-----UGCCGU-------------UGCCUCUU--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.