miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 140249 0.67 0.917261
Target:  5'- uGAgGUCU-CGGCGACGGuGAcGCcGCu -3'
miRNA:   3'- -CUgCAGGuGCCGUUGCCuCUuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 139098 0.71 0.750356
Target:  5'- cGACGU-CGCGGCugcuGCuGAGcGGCGGCg -3'
miRNA:   3'- -CUGCAgGUGCCGu---UGcCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 138593 0.79 0.334341
Target:  5'- uGACuUCCGCGGCAGCGGuGggGU-GCa -3'
miRNA:   3'- -CUGcAGGUGCCGUUGCCuCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 137289 0.7 0.769451
Target:  5'- cGGCGUUgGCGGCGACGcGGgcGUacGGCa -3'
miRNA:   3'- -CUGCAGgUGCCGUUGCcUCuuCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 136416 0.69 0.814883
Target:  5'- -cCGUCCGCGGUcucguagucugaGGCGGAaGAGCAuggGCg -3'
miRNA:   3'- cuGCAGGUGCCG------------UUGCCUcUUCGU---CG- -5'
24349 5' -54.9 NC_005264.1 + 136247 0.69 0.856161
Target:  5'- cGACGgaCACGGCucAUGGGuuAGCGGCg -3'
miRNA:   3'- -CUGCagGUGCCGu-UGCCUcuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 135929 0.66 0.943007
Target:  5'- aACGUUCGauUGGCAcagGCGGccGGggGCgAGCg -3'
miRNA:   3'- cUGCAGGU--GCCGU---UGCC--UCuuCG-UCG- -5'
24349 5' -54.9 NC_005264.1 + 132633 0.69 0.840212
Target:  5'- cGGCGaUCGCGGUcgggacGCGGgcAGggGCGGCg -3'
miRNA:   3'- -CUGCaGGUGCCGu-----UGCC--UCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 132470 0.69 0.840212
Target:  5'- aGACGcgaCGCGGCGGCGccGAAGgGGCu -3'
miRNA:   3'- -CUGCag-GUGCCGUUGCcuCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 132344 0.66 0.947441
Target:  5'- gGACGgCCGCGcGgAGCaGGAGGAGaggGGCg -3'
miRNA:   3'- -CUGCaGGUGC-CgUUG-CCUCUUCg--UCG- -5'
24349 5' -54.9 NC_005264.1 + 131572 0.67 0.903411
Target:  5'- cAUGUgCGCGGCAccuggcgccuagguGUGGAGGgAGCGGCg -3'
miRNA:   3'- cUGCAgGUGCCGU--------------UGCCUCU-UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 129743 0.71 0.720954
Target:  5'- cGCGUCaGCGaGCAagcaaGCGGGGAaacgAGCGGCg -3'
miRNA:   3'- cUGCAGgUGC-CGU-----UGCCUCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 128908 0.74 0.578493
Target:  5'- cGGCGcgCCACGGCcuucccagcccuGGCGGcAGAaaGGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG------------UUGCC-UCU--UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 127318 0.66 0.938336
Target:  5'- aGGCGcCCgugGGCGACGGGGGcaccugcgccGCGGCg -3'
miRNA:   3'- -CUGCaGGug-CCGUUGCCUCUu---------CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 126248 0.66 0.951231
Target:  5'- aGGCGuaucuuuauaccaUCCugGGCGuguUGGuccgcGGAGGCGGCc -3'
miRNA:   3'- -CUGC-------------AGGugCCGUu--GCC-----UCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 125982 0.69 0.856161
Target:  5'- gGGCGUgCUGCGGa---GGAGggGCAGa -3'
miRNA:   3'- -CUGCA-GGUGCCguugCCUCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 125452 0.7 0.805208
Target:  5'- cACGUacacucUCGCGGCGgcgucgcugGCGGAGAacuccucGGCGGCg -3'
miRNA:   3'- cUGCA------GGUGCCGU---------UGCCUCU-------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 124295 0.76 0.479898
Target:  5'- aGGCGagUCGCGGCcgGACGGcGggGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG--UUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 123695 0.68 0.870561
Target:  5'- gGACGUCgguggcuCACaGCAGgcCGGAGAGGCcgaAGCg -3'
miRNA:   3'- -CUGCAG-------GUGcCGUU--GCCUCUUCG---UCG- -5'
24349 5' -54.9 NC_005264.1 + 123545 0.79 0.334341
Target:  5'- gGGCGUCCGCGGaGGgGGAGggGUGGUc -3'
miRNA:   3'- -CUGCAGGUGCCgUUgCCUCuuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.