miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 162707 0.67 0.917261
Target:  5'- cGGCGUUaagGCGGCcGCcGGGGAGCGGg -3'
miRNA:   3'- -CUGCAGg--UGCCGuUGcCUCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 161975 0.7 0.806095
Target:  5'- uACGUCCgggcGCGGCAAcgccuCGGAGggGgaaaGGCc -3'
miRNA:   3'- cUGCAGG----UGCCGUU-----GCCUCuuCg---UCG- -5'
24349 5' -54.9 NC_005264.1 + 160655 0.69 0.831949
Target:  5'- gGGCG-CC--GGCAAUGGAGggGCAacGCc -3'
miRNA:   3'- -CUGCaGGugCCGUUGCCUCuuCGU--CG- -5'
24349 5' -54.9 NC_005264.1 + 159394 0.71 0.74939
Target:  5'- gGGCG-CCACgGGCGGCGGAccccugaGAAGUggGGCg -3'
miRNA:   3'- -CUGCaGGUG-CCGUUGCCU-------CUUCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 159091 0.69 0.840212
Target:  5'- uGCGUCCGCcgugaagccGGCGAucgcgagacguCGGAGAAGCccgcccgcGGCa -3'
miRNA:   3'- cUGCAGGUG---------CCGUU-----------GCCUCUUCG--------UCG- -5'
24349 5' -54.9 NC_005264.1 + 158953 0.7 0.806095
Target:  5'- cGGCGUaaacgaCGCGaaGACGGAGAcguggGGCAGCc -3'
miRNA:   3'- -CUGCAg-----GUGCcgUUGCCUCU-----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 158241 0.69 0.823503
Target:  5'- uACGccgCCGCGGCGcugGCGGGGAGGgccuGCg -3'
miRNA:   3'- cUGCa--GGUGCCGU---UGCCUCUUCgu--CG- -5'
24349 5' -54.9 NC_005264.1 + 157282 0.66 0.931908
Target:  5'- -cUGUCCGCGGUGcuguCGGuGAcgucagucccggacGGCGGCg -3'
miRNA:   3'- cuGCAGGUGCCGUu---GCCuCU--------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 156583 0.67 0.904665
Target:  5'- cGACGgcggCgACGaccGCGACGGAGGcggcaagucucgcGGCGGCc -3'
miRNA:   3'- -CUGCa---GgUGC---CGUUGCCUCU-------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 155261 0.68 0.871298
Target:  5'- ---cUCCGCaGCGgcGCGGGGuAGGCGGCg -3'
miRNA:   3'- cugcAGGUGcCGU--UGCCUC-UUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 155232 0.66 0.938336
Target:  5'- cGAUG-CUGCGGCGGgGGAuGAGGaAGCa -3'
miRNA:   3'- -CUGCaGGUGCCGUUgCCU-CUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 152342 0.66 0.938336
Target:  5'- cGACGcUCA-GGCAAuCGGGGAGGaaCAGCu -3'
miRNA:   3'- -CUGCaGGUgCCGUU-GCCUCUUC--GUCG- -5'
24349 5' -54.9 NC_005264.1 + 151877 0.73 0.618311
Target:  5'- gGGCGUCUucGCgGGCAucagcuguaugugGCGGAGggGaCGGCg -3'
miRNA:   3'- -CUGCAGG--UG-CCGU-------------UGCCUCuuC-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 149642 0.74 0.578493
Target:  5'- cGACGgCgGCGGCGACGGAuccgcgcGCAGCg -3'
miRNA:   3'- -CUGCaGgUGCCGUUGCCUcuu----CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 149415 0.74 0.587645
Target:  5'- cGCGUCUcggcgGCGGCGgucgcgcgccgguGCGGAGAGcuGCGGCg -3'
miRNA:   3'- cUGCAGG-----UGCCGU-------------UGCCUCUU--CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 148249 0.67 0.905289
Target:  5'- cGCGUUCGCGGCGGCGuuucacGGGAcagauuugcccGGCGGg -3'
miRNA:   3'- cUGCAGGUGCCGUUGC------CUCU-----------UCGUCg -5'
24349 5' -54.9 NC_005264.1 + 145937 0.68 0.863076
Target:  5'- -uCGUCCGCGGcCGACGG-GAAuuucucuGCuGCg -3'
miRNA:   3'- cuGCAGGUGCC-GUUGCCuCUU-------CGuCG- -5'
24349 5' -54.9 NC_005264.1 + 145517 1.12 0.00234
Target:  5'- aGACGUCCACGGCAACGGAGAAGCAGCg -3'
miRNA:   3'- -CUGCAGGUGCCGUUGCCUCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 142969 0.66 0.938336
Target:  5'- cGCGgCCGCGGCGGucucuCGGGcauGAGGCGGg -3'
miRNA:   3'- cUGCaGGUGCCGUU-----GCCU---CUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 140785 0.68 0.892375
Target:  5'- -cCGUaCCACGGa---GGGGAcAGCGGCa -3'
miRNA:   3'- cuGCA-GGUGCCguugCCUCU-UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.