miRNA display CGI


Results 81 - 100 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 129481 0.67 0.506773
Target:  5'- aACCCGACuCGAGaUUGCgGCGGCg-- -3'
miRNA:   3'- gUGGGCUGuGCUC-GGCGgCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 93864 0.67 0.506773
Target:  5'- gGCCCGcuaaGCugGCGAGCCagGCgGCGGaCCUUa -3'
miRNA:   3'- gUGGGC----UG--UGCUCGG--CGgCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 119305 0.67 0.506773
Target:  5'- aACCCGACAucugggcaccCGAGCCcuuCCuCGGUCUCc -3'
miRNA:   3'- gUGGGCUGU----------GCUCGGc--GGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 66610 0.67 0.506773
Target:  5'- gCGCCgCGuuGC-CGGcGCCGUCGCGGCC-Cg -3'
miRNA:   3'- -GUGG-GC--UGuGCU-CGGCGGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 278 0.67 0.506773
Target:  5'- aACCCGACAucugggcaccCGAGCCcuuCCuCGGUCUCc -3'
miRNA:   3'- gUGGGCUGU----------GCUCGGc--GGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 69348 0.67 0.506773
Target:  5'- ---aCGACGCGccGGCCGCCaGCaGcGCCUCa -3'
miRNA:   3'- guggGCUGUGC--UCGGCGG-CG-C-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 55828 0.67 0.497646
Target:  5'- aGCCgGugGCGGcGCgGCUGacugGGCCUCa -3'
miRNA:   3'- gUGGgCugUGCU-CGgCGGCg---CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 93039 0.67 0.497646
Target:  5'- cCGCgCCGaAUGCGuGCUGCUgcgcugccauGCGGCCUCc -3'
miRNA:   3'- -GUG-GGC-UGUGCuCGGCGG----------CGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 98697 0.67 0.497646
Target:  5'- gGCCgGAuCGCGGcGCCGUgGCGaGCCUg -3'
miRNA:   3'- gUGGgCU-GUGCU-CGGCGgCGC-CGGAg -5'
24350 3' -63.8 NC_005264.1 + 79702 0.67 0.497646
Target:  5'- aCACCaugagGGCagACGcGCCuCCGCGGCCUUg -3'
miRNA:   3'- -GUGGg----CUG--UGCuCGGcGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 115525 0.67 0.497646
Target:  5'- aCGCCuCGACGCGGGCaguuccCCGCuGCCaUCa -3'
miRNA:   3'- -GUGG-GCUGUGCUCGgc----GGCGcCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 71991 0.68 0.492206
Target:  5'- gAUCCuACGCGAGCUGUuucuugcucgacgugCGCGGCCg- -3'
miRNA:   3'- gUGGGcUGUGCUCGGCG---------------GCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 5052 0.68 0.488594
Target:  5'- gUACCCuucuGGCAgGGGUCGCaagGCGGCCa- -3'
miRNA:   3'- -GUGGG----CUGUgCUCGGCGg--CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 124079 0.68 0.488594
Target:  5'- gUACCCuucuGGCAgGGGUCGCaagGCGGCCa- -3'
miRNA:   3'- -GUGGG----CUGUgCUCGGCGg--CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 136405 0.68 0.488594
Target:  5'- --aCCGACaACGc-CCGuCCGCGGUCUCg -3'
miRNA:   3'- gugGGCUG-UGCucGGC-GGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 107488 0.68 0.47962
Target:  5'- aUACgCUGugACGAagGCCGCCGCGaGCgaCa -3'
miRNA:   3'- -GUG-GGCugUGCU--CGGCGGCGC-CGgaG- -5'
24350 3' -63.8 NC_005264.1 + 55717 0.68 0.470727
Target:  5'- cCGCCUaGACAgGAGU--CCGCGGCUUCu -3'
miRNA:   3'- -GUGGG-CUGUgCUCGgcGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 27977 0.68 0.470727
Target:  5'- aCGCgUGACgACGAccGCCguaGCCGCGGCCcaUCg -3'
miRNA:   3'- -GUGgGCUG-UGCU--CGG---CGGCGCCGG--AG- -5'
24350 3' -63.8 NC_005264.1 + 18044 0.68 0.470727
Target:  5'- --gCCGACGCGaAGCggcggCGCCGCGaGCCa- -3'
miRNA:   3'- gugGGCUGUGC-UCG-----GCGGCGC-CGGag -5'
24350 3' -63.8 NC_005264.1 + 21348 0.68 0.470727
Target:  5'- gCugCCGuucguCcCGGGCCGCCuCGGCCg- -3'
miRNA:   3'- -GugGGCu----GuGCUCGGCGGcGCCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.