miRNA display CGI


Results 61 - 80 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 159174 0.67 0.533625
Target:  5'- --gCCGAgACG-GCCGCCcaucgucgagacgGCGGCCaUCg -3'
miRNA:   3'- gugGGCUgUGCuCGGCGG-------------CGCCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 40147 0.67 0.533625
Target:  5'- --gCCGAgACG-GCCGCCcaucgucgagacgGCGGCCaUCg -3'
miRNA:   3'- gugGGCUgUGCuCGGCGG-------------CGCCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 3643 0.67 0.533625
Target:  5'- aCAUUCGuCGCGAugGCCGCCgucucgacgauggGCGGCCg- -3'
miRNA:   3'- -GUGGGCuGUGCU--CGGCGG-------------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 122670 0.67 0.533625
Target:  5'- aCAUUCGuCGCGAugGCCGCCgucucgacgauggGCGGCCg- -3'
miRNA:   3'- -GUGGGCuGUGCU--CGGCGG-------------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 126157 0.67 0.525235
Target:  5'- cCGgCCGAC-UGAGCCgacgaaacgugGUCGCGGCCa- -3'
miRNA:   3'- -GUgGGCUGuGCUCGG-----------CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 131706 0.67 0.525235
Target:  5'- --aCCG-CACGGGuCCGUCGCGGaCCa- -3'
miRNA:   3'- gugGGCuGUGCUC-GGCGGCGCC-GGag -5'
24350 3' -63.8 NC_005264.1 + 7130 0.67 0.525235
Target:  5'- cCGgCCGAC-UGAGCCgacgaaacgugGUCGCGGCCa- -3'
miRNA:   3'- -GUgGGCUGuGCUCGG-----------CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 12679 0.67 0.525235
Target:  5'- --aCCG-CACGGGuCCGUCGCGGaCCa- -3'
miRNA:   3'- gugGGCuGUGCUC-GGCGGCGCC-GGag -5'
24350 3' -63.8 NC_005264.1 + 144784 0.67 0.525235
Target:  5'- gCGCCCuGGCucGCGGcGCCGCCGCuucGCgUCg -3'
miRNA:   3'- -GUGGG-CUG--UGCU-CGGCGGCGc--CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 10042 0.67 0.524305
Target:  5'- uCACCUGGgcugUGCGAGCCcaucauaacugcaGCCGCGGCg-- -3'
miRNA:   3'- -GUGGGCU----GUGCUCGG-------------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 67470 0.67 0.515971
Target:  5'- aCGCCuggcaguuuggCGGCACGcGCCGCCcGuCGGCCcCa -3'
miRNA:   3'- -GUGG-----------GCUGUGCuCGGCGG-C-GCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 33961 0.67 0.515971
Target:  5'- gCGCCCGAUAgGGGCCGCUugacCCUCu -3'
miRNA:   3'- -GUGGGCUGUgCUCGGCGGcgccGGAG- -5'
24350 3' -63.8 NC_005264.1 + 18000 0.67 0.515971
Target:  5'- gGCaCCGGCucugacggcgGCGGGUCgGCCGCGGUCa- -3'
miRNA:   3'- gUG-GGCUG----------UGCUCGG-CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 152988 0.67 0.515971
Target:  5'- gCGCCCGAUAgGGGCCGCUugacCCUCu -3'
miRNA:   3'- -GUGGGCUGUgCUCGGCGGcgccGGAG- -5'
24350 3' -63.8 NC_005264.1 + 69813 0.67 0.515971
Target:  5'- gCAUUCGGCGCGGacgacGCCGCCGgGGUg-- -3'
miRNA:   3'- -GUGGGCUGUGCU-----CGGCGGCgCCGgag -5'
24350 3' -63.8 NC_005264.1 + 88426 0.67 0.515971
Target:  5'- --aCCGACAUGGGCUcCCGCaGCCa- -3'
miRNA:   3'- gugGGCUGUGCUCGGcGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 68976 0.67 0.513204
Target:  5'- uGCCaCGGCACGAcuacCCGCCGCauuauugcgcgcacGGCCa- -3'
miRNA:   3'- gUGG-GCUGUGCUc---GGCGGCG--------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 22282 0.67 0.513204
Target:  5'- aACCCG-CGCGcGCCcuucugccaucccaGCCGCG-CCUCa -3'
miRNA:   3'- gUGGGCuGUGCuCGG--------------CGGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 93864 0.67 0.506773
Target:  5'- gGCCCGcuaaGCugGCGAGCCagGCgGCGGaCCUUa -3'
miRNA:   3'- gUGGGC----UG--UGCUCGG--CGgCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 119305 0.67 0.506773
Target:  5'- aACCCGACAucugggcaccCGAGCCcuuCCuCGGUCUCc -3'
miRNA:   3'- gUGGGCUGU----------GCUCGGc--GGcGCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.