miRNA display CGI


Results 61 - 80 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 7351 0.7 0.341519
Target:  5'- uCGCaCCGGCaaaaucugGCG-GCCGCCGCGGUUUUc -3'
miRNA:   3'- -GUG-GGCUG--------UGCuCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 69079 0.7 0.341519
Target:  5'- uCGCCaGAUGCGAucucGCgGUCGUGGCCUCu -3'
miRNA:   3'- -GUGGgCUGUGCU----CGgCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 45883 0.69 0.4061
Target:  5'- uCGgCCGcCACGAacuucaguguauugcGCCGCCGCGGCa-- -3'
miRNA:   3'- -GUgGGCuGUGCU---------------CGGCGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 127012 0.69 0.410999
Target:  5'- -gUCCGuGCACGGGCCGCCauugcGgGGCCg- -3'
miRNA:   3'- guGGGC-UGUGCUCGGCGG-----CgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 117188 0.69 0.427588
Target:  5'- gCGCuuGGCGCcuAGCCGCCGCGuCgUCa -3'
miRNA:   3'- -GUGggCUGUGc-UCGGCGGCGCcGgAG- -5'
24350 3' -63.8 NC_005264.1 + 34747 0.69 0.427588
Target:  5'- -uCCCGGCGCGccGGUCGCCGCuGUCg- -3'
miRNA:   3'- guGGGCUGUGC--UCGGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 128094 0.69 0.428428
Target:  5'- gACCCGACGCGcugaggacgagcgauGCCaGCUGgGGCCg- -3'
miRNA:   3'- gUGGGCUGUGCu--------------CGG-CGGCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 93775 0.68 0.43603
Target:  5'- uGCgCGACgACGAugaccugcccgGCgGCCGCGGCCa- -3'
miRNA:   3'- gUGgGCUG-UGCU-----------CGgCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 35270 0.68 0.43603
Target:  5'- aACaCUGGCGCGGGCgCgGCCGUGGuCCUg -3'
miRNA:   3'- gUG-GGCUGUGCUCG-G-CGGCGCC-GGAg -5'
24350 3' -63.8 NC_005264.1 + 112555 0.68 0.443709
Target:  5'- gACCUGuuagccgcuacGCACGAgcaacucggaaucGCCGCCGCGGCa-- -3'
miRNA:   3'- gUGGGC-----------UGUGCU-------------CGGCGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 157545 0.69 0.394814
Target:  5'- uCGCCCGcccCACGggucAGCCGCCGCcccgccguccGGCCg- -3'
miRNA:   3'- -GUGGGCu--GUGC----UCGGCGGCG----------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 124237 0.69 0.394814
Target:  5'- gCGCCgCGGCgagGCGaAGCUcuucuuCCGCGGCCUCg -3'
miRNA:   3'- -GUGG-GCUG---UGC-UCGGc-----GGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 132442 0.7 0.341519
Target:  5'- cCGCaCCGGCGCGcGaCCGCCGCcGCCg- -3'
miRNA:   3'- -GUG-GGCUGUGCuC-GGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 145275 0.7 0.363709
Target:  5'- aUugCUGGCACGGGgagGCCGCGGUCUa -3'
miRNA:   3'- -GugGGCUGUGCUCgg-CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 35827 0.7 0.371324
Target:  5'- aACCaCGAUGCGAGuuGCCGCGugggcaGCgUCa -3'
miRNA:   3'- gUGG-GCUGUGCUCggCGGCGC------CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 121415 0.7 0.371324
Target:  5'- uCGCCCG-CAgGAGcCCGgCGCcGGCCUg -3'
miRNA:   3'- -GUGGGCuGUgCUC-GGCgGCG-CCGGAg -5'
24350 3' -63.8 NC_005264.1 + 133688 0.7 0.379048
Target:  5'- uGCUCGcCGCGGuccuuGCCGCCGCGcacuggugcuGCCUCu -3'
miRNA:   3'- gUGGGCuGUGCU-----CGGCGGCGC----------CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 39621 0.69 0.386878
Target:  5'- uGCUCcuaGACACGGcgcugugguuuuGCCG-CGCGGCCUCg -3'
miRNA:   3'- gUGGG---CUGUGCU------------CGGCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 156004 0.69 0.394814
Target:  5'- gCGCgCUGGCGCcauAGUCGCCGCcGCCUCc -3'
miRNA:   3'- -GUG-GGCUGUGc--UCGGCGGCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 127048 0.69 0.394814
Target:  5'- gCGCCCGcCACGAcggcGCCaCCGCGcCCUCc -3'
miRNA:   3'- -GUGGGCuGUGCU----CGGcGGCGCcGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.