miRNA display CGI


Results 61 - 80 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 131706 0.67 0.525235
Target:  5'- --aCCG-CACGGGuCCGUCGCGGaCCa- -3'
miRNA:   3'- gugGGCuGUGCUC-GGCGGCGCC-GGag -5'
24350 3' -63.8 NC_005264.1 + 10042 0.67 0.524305
Target:  5'- uCACCUGGgcugUGCGAGCCcaucauaacugcaGCCGCGGCg-- -3'
miRNA:   3'- -GUGGGCU----GUGCUCGG-------------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 102840 0.67 0.543945
Target:  5'- gGCCgCGGcCACGcGGCCGUcucgcuCGCGGCCa- -3'
miRNA:   3'- gUGG-GCU-GUGC-UCGGCG------GCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 151340 0.67 0.543945
Target:  5'- gCACaUgGGCAaGGGCCG-CGCGGCCUUc -3'
miRNA:   3'- -GUG-GgCUGUgCUCGGCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 138671 0.67 0.534561
Target:  5'- --aCCGAcCGCG-GCCGCaGCaGCCUCg -3'
miRNA:   3'- gugGGCU-GUGCuCGGCGgCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 127825 0.67 0.534561
Target:  5'- -uCCCGACAgCGuugccuCCGCgGCGGCCg- -3'
miRNA:   3'- guGGGCUGU-GCuc----GGCGgCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 40147 0.67 0.533625
Target:  5'- --gCCGAgACG-GCCGCCcaucgucgagacgGCGGCCaUCg -3'
miRNA:   3'- gugGGCUgUGCuCGGCGG-------------CGCCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 3643 0.67 0.533625
Target:  5'- aCAUUCGuCGCGAugGCCGCCgucucgacgauggGCGGCCg- -3'
miRNA:   3'- -GUGGGCuGUGCU--CGGCGG-------------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 7130 0.67 0.525235
Target:  5'- cCGgCCGAC-UGAGCCgacgaaacgugGUCGCGGCCa- -3'
miRNA:   3'- -GUgGGCUGuGCUCGG-----------CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 79702 0.67 0.497646
Target:  5'- aCACCaugagGGCagACGcGCCuCCGCGGCCUUg -3'
miRNA:   3'- -GUGGg----CUG--UGCuCGGcGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 55828 0.67 0.497646
Target:  5'- aGCCgGugGCGGcGCgGCUGacugGGCCUCa -3'
miRNA:   3'- gUGGgCugUGCU-CGgCGGCg---CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 115525 0.67 0.497646
Target:  5'- aCGCCuCGACGCGGGCaguuccCCGCuGCCaUCa -3'
miRNA:   3'- -GUGG-GCUGUGCUCGgc----GGCGcCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 59522 0.67 0.506773
Target:  5'- gGCUCGAgaCACGAGacuCCuaCGCGGUCUCu -3'
miRNA:   3'- gUGGGCU--GUGCUC---GGcgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 66610 0.67 0.506773
Target:  5'- gCGCCgCGuuGC-CGGcGCCGUCGCGGCC-Cg -3'
miRNA:   3'- -GUGG-GC--UGuGCU-CGGCGGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 119305 0.67 0.506773
Target:  5'- aACCCGACAucugggcaccCGAGCCcuuCCuCGGUCUCc -3'
miRNA:   3'- gUGGGCUGU----------GCUCGGc--GGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 93864 0.67 0.506773
Target:  5'- gGCCCGcuaaGCugGCGAGCCagGCgGCGGaCCUUa -3'
miRNA:   3'- gUGGGC----UG--UGCUCGG--CGgCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 68976 0.67 0.513204
Target:  5'- uGCCaCGGCACGAcuacCCGCCGCauuauugcgcgcacGGCCa- -3'
miRNA:   3'- gUGG-GCUGUGCUc---GGCGGCG--------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 22282 0.67 0.513204
Target:  5'- aACCCG-CGCGcGCCcuucugccaucccaGCCGCG-CCUCa -3'
miRNA:   3'- gUGGGCuGUGCuCGG--------------CGGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 69813 0.67 0.515971
Target:  5'- gCAUUCGGCGCGGacgacGCCGCCGgGGUg-- -3'
miRNA:   3'- -GUGGGCUGUGCU-----CGGCGGCgCCGgag -5'
24350 3' -63.8 NC_005264.1 + 88426 0.67 0.515971
Target:  5'- --aCCGACAUGGGCUcCCGCaGCCa- -3'
miRNA:   3'- gugGGCUGUGCUCGGcGGCGcCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.