miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 20045 0.66 0.562867
Target:  5'- gGCCUGGCAUGucGCCa-CGCGGCCcCg -3'
miRNA:   3'- gUGGGCUGUGCu-CGGcgGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 156678 0.66 0.576218
Target:  5'- uGCCCcACACGuGCaCGCgaugcgcgacgggcgCGCGGcCCUCg -3'
miRNA:   3'- gUGGGcUGUGCuCG-GCG---------------GCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 98417 0.66 0.590599
Target:  5'- uCGCCUGGCGCuuacggacuaucuGAGCCaGUCGUGGagCUCg -3'
miRNA:   3'- -GUGGGCUGUG-------------CUCGG-CGGCGCCg-GAG- -5'
24350 3' -63.8 NC_005264.1 + 159566 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 156153 0.66 0.581962
Target:  5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3'
miRNA:   3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 129853 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 115972 0.66 0.581962
Target:  5'- gCGCCCGACAgGGacgcugaacGCCagGCCGUGuGCgUCg -3'
miRNA:   3'- -GUGGGCUGUgCU---------CGG--CGGCGC-CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 126964 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 39104 0.66 0.581962
Target:  5'- uGCCCGuGCACGccuacguGuuGCUGCgcuucGGCCUCu -3'
miRNA:   3'- gUGGGC-UGUGCu------CggCGGCG-----CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 161301 0.66 0.572396
Target:  5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3'
miRNA:   3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 68252 0.66 0.571441
Target:  5'- uGCCCGcgcCGCGGGCgGCCugcugcuGCcGCCUCu -3'
miRNA:   3'- gUGGGCu--GUGCUCGgCGG-------CGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 57988 0.66 0.562867
Target:  5'- -cCCCG-CGCG-GCgGCCGUGGCUc- -3'
miRNA:   3'- guGGGCuGUGCuCGgCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 136675 0.66 0.562867
Target:  5'- --gCCGACA-GuGCCgcgaaaguccucGCCGCGGCCUg -3'
miRNA:   3'- gugGGCUGUgCuCGG------------CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 88426 0.67 0.515971
Target:  5'- --aCCGACAUGGGCUcCCGCaGCCa- -3'
miRNA:   3'- gugGGCUGUGCUCGGcGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 69813 0.67 0.515971
Target:  5'- gCAUUCGGCGCGGacgacGCCGCCGgGGUg-- -3'
miRNA:   3'- -GUGGGCUGUGCU-----CGGCGGCgCCGgag -5'
24350 3' -63.8 NC_005264.1 + 22282 0.67 0.513204
Target:  5'- aACCCG-CGCGcGCCcuucugccaucccaGCCGCG-CCUCa -3'
miRNA:   3'- gUGGGCuGUGCuCGG--------------CGGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 68976 0.67 0.513204
Target:  5'- uGCCaCGGCACGAcuacCCGCCGCauuauugcgcgcacGGCCa- -3'
miRNA:   3'- gUGG-GCUGUGCUc---GGCGGCG--------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 93864 0.67 0.506773
Target:  5'- gGCCCGcuaaGCugGCGAGCCagGCgGCGGaCCUUa -3'
miRNA:   3'- gUGGGC----UG--UGCUCGG--CGgCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 152988 0.67 0.515971
Target:  5'- gCGCCCGAUAgGGGCCGCUugacCCUCu -3'
miRNA:   3'- -GUGGGCUGUgCUCGGCGGcgccGGAG- -5'
24350 3' -63.8 NC_005264.1 + 159174 0.67 0.533625
Target:  5'- --gCCGAgACG-GCCGCCcaucgucgagacgGCGGCCaUCg -3'
miRNA:   3'- gugGGCUgUGCuCGGCGG-------------CGCCGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.