miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 67478 0.74 0.199362
Target:  5'- aACCCGAgGcCGGGCCGCCGCcccGCCg- -3'
miRNA:   3'- gUGGGCUgU-GCUCGGCGGCGc--CGGag -5'
24350 3' -63.8 NC_005264.1 + 19871 0.75 0.172964
Target:  5'- uGCCCGA---GAGaCCGCCGCGGCCg- -3'
miRNA:   3'- gUGGGCUgugCUC-GGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 131913 0.79 0.086959
Target:  5'- gACCCGGacggaccguCGAGCCGCC-CGGCCUCg -3'
miRNA:   3'- gUGGGCUgu-------GCUCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 83422 0.8 0.078632
Target:  5'- cCGCCC-ACGCuGGGuuCCGCCGCGGCCUCg -3'
miRNA:   3'- -GUGGGcUGUG-CUC--GGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 62808 0.81 0.065864
Target:  5'- cCACCgGACGCagcagcGCCGCCGCGGCCUUc -3'
miRNA:   3'- -GUGGgCUGUGcu----CGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 18213 0.71 0.293621
Target:  5'- uUACCUGACACGAGCgGCuagcuagugaCGCgGGCCg- -3'
miRNA:   3'- -GUGGGCUGUGCUCGgCG----------GCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 154595 0.71 0.293621
Target:  5'- aCGCCagcgaagaGGgGgGAGCUGCUGCGGCUUCg -3'
miRNA:   3'- -GUGGg-------CUgUgCUCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 127048 0.69 0.394814
Target:  5'- gCGCCCGcCACGAcggcGCCaCCGCGcCCUCc -3'
miRNA:   3'- -GUGGGCuGUGCU----CGGcGGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 156004 0.69 0.394814
Target:  5'- gCGCgCUGGCGCcauAGUCGCCGCcGCCUCc -3'
miRNA:   3'- -GUG-GGCUGUGc--UCGGCGGCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 39621 0.69 0.386878
Target:  5'- uGCUCcuaGACACGGcgcugugguuuuGCCG-CGCGGCCUCg -3'
miRNA:   3'- gUGGG---CUGUGCU------------CGGCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 133688 0.7 0.379048
Target:  5'- uGCUCGcCGCGGuccuuGCCGCCGCGcacuggugcuGCCUCu -3'
miRNA:   3'- gUGGGCuGUGCU-----CGGCGGCGC----------CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 121415 0.7 0.371324
Target:  5'- uCGCCCG-CAgGAGcCCGgCGCcGGCCUg -3'
miRNA:   3'- -GUGGGCuGUgCUC-GGCgGCG-CCGGAg -5'
24350 3' -63.8 NC_005264.1 + 35827 0.7 0.371324
Target:  5'- aACCaCGAUGCGAGuuGCCGCGugggcaGCgUCa -3'
miRNA:   3'- gUGG-GCUGUGCUCggCGGCGC------CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 145275 0.7 0.363709
Target:  5'- aUugCUGGCACGGGgagGCCGCGGUCUa -3'
miRNA:   3'- -GugGGCUGUGCUCgg-CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 132442 0.7 0.341519
Target:  5'- cCGCaCCGGCGCGcGaCCGCCGCcGCCg- -3'
miRNA:   3'- -GUG-GGCUGUGCuC-GGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 69079 0.7 0.341519
Target:  5'- uCGCCaGAUGCGAucucGCgGUCGUGGCCUCu -3'
miRNA:   3'- -GUGGgCUGUGCU----CGgCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 7351 0.7 0.341519
Target:  5'- uCGCaCCGGCaaaaucugGCG-GCCGCCGCGGUUUUc -3'
miRNA:   3'- -GUG-GGCUG--------UGCuCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 127320 0.71 0.327278
Target:  5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3'
miRNA:   3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 20236 0.71 0.313482
Target:  5'- cCGCgCGugACGGGUgggcagggguugCGgCGCGGCCUCg -3'
miRNA:   3'- -GUGgGCugUGCUCG------------GCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 65160 0.71 0.30013
Target:  5'- aCACCgCGGCgGCGcccucucuGGCCaugGCCGCGGCCUUu -3'
miRNA:   3'- -GUGG-GCUG-UGC--------UCGG---CGGCGCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.