miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 7130 0.67 0.525235
Target:  5'- cCGgCCGAC-UGAGCCgacgaaacgugGUCGCGGCCa- -3'
miRNA:   3'- -GUgGGCUGuGCUCGG-----------CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 10827 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 39836 0.66 0.601185
Target:  5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3'
miRNA:   3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 3643 0.67 0.533625
Target:  5'- aCAUUCGuCGCGAugGCCGCCgucucgacgauggGCGGCCg- -3'
miRNA:   3'- -GUGGGCuGUGCU--CGGCGG-------------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 7637 0.66 0.605041
Target:  5'- uCGCCCaacCACGAaacGCCGCCuGCcggcucggagggcucGGCCUCc -3'
miRNA:   3'- -GUGGGcu-GUGCU---CGGCGG-CG---------------CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 86181 0.68 0.444568
Target:  5'- uCugCCG-CACcGGUgGCCGCaucGGCCUCg -3'
miRNA:   3'- -GugGGCuGUGcUCGgCGGCG---CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 46398 0.66 0.601185
Target:  5'- -cCCCGAU-CGucGCCcCCGCGGCCa- -3'
miRNA:   3'- guGGGCUGuGCu-CGGcGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 159832 0.68 0.452331
Target:  5'- gACCCcagaGC-CGAGCCGCCGgcccaguCGGCgCUCg -3'
miRNA:   3'- gUGGGc---UGuGCUCGGCGGC-------GCCG-GAG- -5'
24350 3' -63.8 NC_005264.1 + 14538 0.68 0.453198
Target:  5'- aACaCCGGCGCGca-CGCgCGCGGUCUCc -3'
miRNA:   3'- gUG-GGCUGUGCucgGCG-GCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 5052 0.68 0.488594
Target:  5'- gUACCCuucuGGCAgGGGUCGCaagGCGGCCa- -3'
miRNA:   3'- -GUGGG----CUGUgCUCGGCGg--CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 278 0.67 0.506773
Target:  5'- aACCCGACAucugggcaccCGAGCCcuuCCuCGGUCUCc -3'
miRNA:   3'- gUGGGCUGU----------GCUCGGc--GGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 18000 0.67 0.515971
Target:  5'- gGCaCCGGCucugacggcgGCGGGUCgGCCGCGGUCa- -3'
miRNA:   3'- gUG-GGCUG----------UGCUCGG-CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 144784 0.67 0.525235
Target:  5'- gCGCCCuGGCucGCGGcGCCGCCGCuucGCgUCg -3'
miRNA:   3'- -GUGGG-CUG--UGCU-CGGCGGCGc--CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 138671 0.67 0.534561
Target:  5'- --aCCGAcCGCG-GCCGCaGCaGCCUCg -3'
miRNA:   3'- gugGGCU-GUGCuCGGCGgCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 97667 0.66 0.562867
Target:  5'- gGCCgCGGcCAUGGccagagagggcGCCGCCGCGGUgUUg -3'
miRNA:   3'- gUGG-GCU-GUGCU-----------CGGCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 44663 0.66 0.572396
Target:  5'- gCGCCaaguuCgACGAGCCGCCagacauggGCGGCCa- -3'
miRNA:   3'- -GUGGgcu--G-UGCUCGGCGG--------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 7938 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 40539 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 3861 0.66 0.591561
Target:  5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3'
miRNA:   3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 9697 0.66 0.598295
Target:  5'- gCGCCuCGACGCuguuucgcgccgcuGAGCCauugugcccGCCGCGGCa-- -3'
miRNA:   3'- -GUGG-GCUGUG--------------CUCGG---------CGGCGCCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.