miRNA display CGI


Results 21 - 40 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 44663 0.66 0.572396
Target:  5'- gCGCCaaguuCgACGAGCCGCCagacauggGCGGCCa- -3'
miRNA:   3'- -GUGGgcu--G-UGCUCGGCGG--------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 7938 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 146403 0.66 0.591561
Target:  5'- aCACCCGcGgGCaGGCC-CCGCGGCagUCg -3'
miRNA:   3'- -GUGGGC-UgUGcUCGGcGGCGCCGg-AG- -5'
24350 3' -63.8 NC_005264.1 + 97513 0.66 0.601185
Target:  5'- --aUUGcCAgGAGCUGCCGCGGCUg- -3'
miRNA:   3'- gugGGCuGUgCUCGGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 12679 0.67 0.525235
Target:  5'- --aCCG-CACGGGuCCGUCGCGGaCCa- -3'
miRNA:   3'- gugGGCuGUGCUC-GGCGGCGCC-GGag -5'
24350 3' -63.8 NC_005264.1 + 102840 0.67 0.543945
Target:  5'- gGCCgCGGcCACGcGGCCGUcucgcuCGCGGCCa- -3'
miRNA:   3'- gUGG-GCU-GUGC-UCGGCG------GCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 10827 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 39836 0.66 0.601185
Target:  5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3'
miRNA:   3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 97667 0.66 0.562867
Target:  5'- gGCCgCGGcCAUGGccagagagggcGCCGCCGCGGUgUUg -3'
miRNA:   3'- gUGG-GCU-GUGCU-----------CGGCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 7637 0.66 0.605041
Target:  5'- uCGCCCaacCACGAaacGCCGCCuGCcggcucggagggcucGGCCUCc -3'
miRNA:   3'- -GUGGGcu-GUGCU---CGGCGG-CG---------------CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 100661 0.66 0.581962
Target:  5'- gGCCCGACGgGAGuuGC-GCGaGCUa- -3'
miRNA:   3'- gUGGGCUGUgCUCggCGgCGC-CGGag -5'
24350 3' -63.8 NC_005264.1 + 92156 0.66 0.566674
Target:  5'- uCGCCCGcGgGCGuaaaaauugccugccGGCggCGCCGCGGCCa- -3'
miRNA:   3'- -GUGGGC-UgUGC---------------UCG--GCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 40539 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 3861 0.66 0.591561
Target:  5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3'
miRNA:   3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 9697 0.66 0.598295
Target:  5'- gCGCCuCGACGCuguuucgcgccgcuGAGCCauugugcccGCCGCGGCa-- -3'
miRNA:   3'- -GUGG-GCUGUG--------------CUCGG---------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 46398 0.66 0.601185
Target:  5'- -cCCCGAU-CGucGCCcCCGCGGCCa- -3'
miRNA:   3'- guGGGCUGuGCu-CGGcGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 18000 0.67 0.515971
Target:  5'- gGCaCCGGCucugacggcgGCGGGUCgGCCGCGGUCa- -3'
miRNA:   3'- gUG-GGCUG----------UGCUCGG-CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 144784 0.67 0.525235
Target:  5'- gCGCCCuGGCucGCGGcGCCGCCGCuucGCgUCg -3'
miRNA:   3'- -GUGGG-CUG--UGCU-CGGCGGCGc--CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 40147 0.67 0.533625
Target:  5'- --gCCGAgACG-GCCGCCcaucgucgagacgGCGGCCaUCg -3'
miRNA:   3'- gugGGCUgUGCuCGGCGG-------------CGCCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 151340 0.67 0.543945
Target:  5'- gCACaUgGGCAaGGGCCG-CGCGGCCUUc -3'
miRNA:   3'- -GUG-GgCUGUgCUCGGCgGCGCCGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.