Results 1 - 20 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 9818 | 0.65 | 0.609865 |
Target: 5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3' miRNA: 3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 10827 | 0.66 | 0.581962 |
Target: 5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3' miRNA: 3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7938 | 0.66 | 0.581962 |
Target: 5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3' miRNA: 3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 145146 | 1.09 | 0.00065 |
Target: 5'- aCACCCGACACGAGCCGCCGCGGCCUCg -3' miRNA: 3'- -GUGGGCUGUGCUCGGCGGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 46398 | 0.66 | 0.601185 |
Target: 5'- -cCCCGAU-CGucGCCcCCGCGGCCa- -3' miRNA: 3'- guGGGCUGuGCu-CGGcGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 102547 | 0.66 | 0.601185 |
Target: 5'- gCGCCCGAaucCGAGuacgucaugcCCGaCGCGGCgCUCa -3' miRNA: 3'- -GUGGGCUgu-GCUC----------GGCgGCGCCG-GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 9697 | 0.66 | 0.598295 |
Target: 5'- gCGCCuCGACGCuguuucgcgccgcuGAGCCauugugcccGCCGCGGCa-- -3' miRNA: 3'- -GUGG-GCUGUG--------------CUCGG---------CGGCGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 139964 | 0.66 | 0.595408 |
Target: 5'- uGCCCGAacCAgGGGUcuauuucgauagguuCG-CGCGGCCUCg -3' miRNA: 3'- gUGGGCU--GUgCUCG---------------GCgGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 3861 | 0.66 | 0.591561 |
Target: 5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3' miRNA: 3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 37126 | 0.66 | 0.581962 |
Target: 5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3' miRNA: 3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 144290 | 0.66 | 0.581962 |
Target: 5'- cCGCuCCGAC-UGAcGCCGgCGCGcCCUCa -3' miRNA: 3'- -GUG-GGCUGuGCU-CGGCgGCGCcGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 146403 | 0.66 | 0.591561 |
Target: 5'- aCACCCGcGgGCaGGCC-CCGCGGCagUCg -3' miRNA: 3'- -GUGGGC-UgUGcUCGGcGGCGCCGg-AG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7637 | 0.66 | 0.605041 |
Target: 5'- uCGCCCaacCACGAaacGCCGCCuGCcggcucggagggcucGGCCUCc -3' miRNA: 3'- -GUGGGcu-GUGCU---CGGCGG-CG---------------CCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 40539 | 0.66 | 0.581962 |
Target: 5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3' miRNA: 3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 39836 | 0.66 | 0.601185 |
Target: 5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3' miRNA: 3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 46838 | 0.66 | 0.591561 |
Target: 5'- aUACCCGACAgaGGGCgaCGCaCaCGGCCUg -3' miRNA: 3'- -GUGGGCUGUg-CUCG--GCG-GcGCCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 102979 | 0.66 | 0.581962 |
Target: 5'- aGCUCaGCAUGA-CCGUgGCGGCCUg -3' miRNA: 3'- gUGGGcUGUGCUcGGCGgCGCCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 100661 | 0.66 | 0.581962 |
Target: 5'- gGCCCGACGgGAGuuGC-GCGaGCUa- -3' miRNA: 3'- gUGGGCUGUgCUCggCGgCGC-CGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 97513 | 0.66 | 0.601185 |
Target: 5'- --aUUGcCAgGAGCUGCCGCGGCUg- -3' miRNA: 3'- gugGGCuGUgCUCGGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 24229 | 0.66 | 0.599258 |
Target: 5'- cCACCUGACgAUGAcuugcaccccaccGCUGCCGCGGaagucaaCCUUa -3' miRNA: 3'- -GUGGGCUG-UGCU-------------CGGCGGCGCC-------GGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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