miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 9818 0.65 0.609865
Target:  5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3'
miRNA:   3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 10827 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 7938 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 145146 1.09 0.00065
Target:  5'- aCACCCGACACGAGCCGCCGCGGCCUCg -3'
miRNA:   3'- -GUGGGCUGUGCUCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 46398 0.66 0.601185
Target:  5'- -cCCCGAU-CGucGCCcCCGCGGCCa- -3'
miRNA:   3'- guGGGCUGuGCu-CGGcGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 102547 0.66 0.601185
Target:  5'- gCGCCCGAaucCGAGuacgucaugcCCGaCGCGGCgCUCa -3'
miRNA:   3'- -GUGGGCUgu-GCUC----------GGCgGCGCCG-GAG- -5'
24350 3' -63.8 NC_005264.1 + 9697 0.66 0.598295
Target:  5'- gCGCCuCGACGCuguuucgcgccgcuGAGCCauugugcccGCCGCGGCa-- -3'
miRNA:   3'- -GUGG-GCUGUG--------------CUCGG---------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 139964 0.66 0.595408
Target:  5'- uGCCCGAacCAgGGGUcuauuucgauagguuCG-CGCGGCCUCg -3'
miRNA:   3'- gUGGGCU--GUgCUCG---------------GCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 3861 0.66 0.591561
Target:  5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3'
miRNA:   3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 37126 0.66 0.581962
Target:  5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3'
miRNA:   3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 144290 0.66 0.581962
Target:  5'- cCGCuCCGAC-UGAcGCCGgCGCGcCCUCa -3'
miRNA:   3'- -GUG-GGCUGuGCU-CGGCgGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 146403 0.66 0.591561
Target:  5'- aCACCCGcGgGCaGGCC-CCGCGGCagUCg -3'
miRNA:   3'- -GUGGGC-UgUGcUCGGcGGCGCCGg-AG- -5'
24350 3' -63.8 NC_005264.1 + 7637 0.66 0.605041
Target:  5'- uCGCCCaacCACGAaacGCCGCCuGCcggcucggagggcucGGCCUCc -3'
miRNA:   3'- -GUGGGcu-GUGCU---CGGCGG-CG---------------CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 40539 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 39836 0.66 0.601185
Target:  5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3'
miRNA:   3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 46838 0.66 0.591561
Target:  5'- aUACCCGACAgaGGGCgaCGCaCaCGGCCUg -3'
miRNA:   3'- -GUGGGCUGUg-CUCG--GCG-GcGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 102979 0.66 0.581962
Target:  5'- aGCUCaGCAUGA-CCGUgGCGGCCUg -3'
miRNA:   3'- gUGGGcUGUGCUcGGCGgCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 100661 0.66 0.581962
Target:  5'- gGCCCGACGgGAGuuGC-GCGaGCUa- -3'
miRNA:   3'- gUGGGCUGUgCUCggCGgCGC-CGGag -5'
24350 3' -63.8 NC_005264.1 + 97513 0.66 0.601185
Target:  5'- --aUUGcCAgGAGCUGCCGCGGCUg- -3'
miRNA:   3'- gugGGCuGUgCUCGGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 24229 0.66 0.599258
Target:  5'- cCACCUGACgAUGAcuugcaccccaccGCUGCCGCGGaagucaaCCUUa -3'
miRNA:   3'- -GUGGGCUG-UGCU-------------CGGCGGCGCC-------GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.