miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 9818 0.65 0.609865
Target:  5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3'
miRNA:   3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 128844 0.65 0.609865
Target:  5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3'
miRNA:   3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 136675 0.66 0.562867
Target:  5'- --gCCGACA-GuGCCgcgaaaguccucGCCGCGGCCUg -3'
miRNA:   3'- gugGGCUGUgCuCGG------------CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 10981 0.66 0.553382
Target:  5'- aCGCCCccCACGugucGCCGCCggagcgGCGGCCcCa -3'
miRNA:   3'- -GUGGGcuGUGCu---CGGCGG------CGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 122887 0.66 0.591561
Target:  5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3'
miRNA:   3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 68422 0.66 0.553382
Target:  5'- uGCUCGcuCugGAcuaccGgCGCCGCGGCCUg -3'
miRNA:   3'- gUGGGCu-GugCU-----CgGCGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 115972 0.66 0.581962
Target:  5'- gCGCCCGACAgGGacgcugaacGCCagGCCGUGuGCgUCg -3'
miRNA:   3'- -GUGGGCUGUgCU---------CGG--CGGCGC-CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 57988 0.66 0.562867
Target:  5'- -cCCCG-CGCG-GCgGCCGUGGCUc- -3'
miRNA:   3'- guGGGCuGUGCuCGgCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 161301 0.66 0.572396
Target:  5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3'
miRNA:   3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 98417 0.66 0.590599
Target:  5'- uCGCCUGGCGCuuacggacuaucuGAGCCaGUCGUGGagCUCg -3'
miRNA:   3'- -GUGGGCUGUG-------------CUCGG-CGGCGCCg-GAG- -5'
24350 3' -63.8 NC_005264.1 + 20045 0.66 0.562867
Target:  5'- gGCCUGGCAUGucGCCa-CGCGGCCcCg -3'
miRNA:   3'- gUGGGCUGUGCu-CGGcgGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 159566 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 39104 0.66 0.581962
Target:  5'- uGCCCGuGCACGccuacguGuuGCUGCgcuucGGCCUCu -3'
miRNA:   3'- gUGGGC-UGUGCu------CggCGGCG-----CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 156678 0.66 0.576218
Target:  5'- uGCCCcACACGuGCaCGCgaugcgcgacgggcgCGCGGcCCUCg -3'
miRNA:   3'- gUGGGcUGUGCuCG-GCG---------------GCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 128724 0.66 0.590599
Target:  5'- gCGCCuCGACGCuguuucggccgcuGAGCCauugugcccGCCGCGGCa-- -3'
miRNA:   3'- -GUGG-GCUGUG-------------CUCGG---------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 156153 0.66 0.581962
Target:  5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3'
miRNA:   3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 68252 0.66 0.571441
Target:  5'- uGCCCGcgcCGCGGGCgGCCugcugcuGCcGCCUCu -3'
miRNA:   3'- gUGGGCu--GUGCUCGgCGG-------CGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 129853 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 22141 0.66 0.553382
Target:  5'- aGCgCGACGCGcGCCuuagauugcGCCGCgGGCCg- -3'
miRNA:   3'- gUGgGCUGUGCuCGG---------CGGCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 126964 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.