Results 1 - 20 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 9818 | 0.65 | 0.609865 |
Target: 5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3' miRNA: 3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 128844 | 0.65 | 0.609865 |
Target: 5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3' miRNA: 3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 136675 | 0.66 | 0.562867 |
Target: 5'- --gCCGACA-GuGCCgcgaaaguccucGCCGCGGCCUg -3' miRNA: 3'- gugGGCUGUgCuCGG------------CGGCGCCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 10981 | 0.66 | 0.553382 |
Target: 5'- aCGCCCccCACGugucGCCGCCggagcgGCGGCCcCa -3' miRNA: 3'- -GUGGGcuGUGCu---CGGCGG------CGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 122887 | 0.66 | 0.591561 |
Target: 5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3' miRNA: 3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 68422 | 0.66 | 0.553382 |
Target: 5'- uGCUCGcuCugGAcuaccGgCGCCGCGGCCUg -3' miRNA: 3'- gUGGGCu-GugCU-----CgGCGGCGCCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 115972 | 0.66 | 0.581962 |
Target: 5'- gCGCCCGACAgGGacgcugaacGCCagGCCGUGuGCgUCg -3' miRNA: 3'- -GUGGGCUGUgCU---------CGG--CGGCGC-CGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 57988 | 0.66 | 0.562867 |
Target: 5'- -cCCCG-CGCG-GCgGCCGUGGCUc- -3' miRNA: 3'- guGGGCuGUGCuCGgCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 161301 | 0.66 | 0.572396 |
Target: 5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3' miRNA: 3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 98417 | 0.66 | 0.590599 |
Target: 5'- uCGCCUGGCGCuuacggacuaucuGAGCCaGUCGUGGagCUCg -3' miRNA: 3'- -GUGGGCUGUG-------------CUCGG-CGGCGCCg-GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 20045 | 0.66 | 0.562867 |
Target: 5'- gGCCUGGCAUGucGCCa-CGCGGCCcCg -3' miRNA: 3'- gUGGGCUGUGCu-CGGcgGCGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 159566 | 0.66 | 0.581962 |
Target: 5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3' miRNA: 3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 39104 | 0.66 | 0.581962 |
Target: 5'- uGCCCGuGCACGccuacguGuuGCUGCgcuucGGCCUCu -3' miRNA: 3'- gUGGGC-UGUGCu------CggCGGCG-----CCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 156678 | 0.66 | 0.576218 |
Target: 5'- uGCCCcACACGuGCaCGCgaugcgcgacgggcgCGCGGcCCUCg -3' miRNA: 3'- gUGGGcUGUGCuCG-GCG---------------GCGCC-GGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 128724 | 0.66 | 0.590599 |
Target: 5'- gCGCCuCGACGCuguuucggccgcuGAGCCauugugcccGCCGCGGCa-- -3' miRNA: 3'- -GUGG-GCUGUG-------------CUCGG---------CGGCGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 156153 | 0.66 | 0.581962 |
Target: 5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3' miRNA: 3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 68252 | 0.66 | 0.571441 |
Target: 5'- uGCCCGcgcCGCGGGCgGCCugcugcuGCcGCCUCu -3' miRNA: 3'- gUGGGCu--GUGCUCGgCGG-------CGcCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 129853 | 0.66 | 0.581962 |
Target: 5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3' miRNA: 3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 22141 | 0.66 | 0.553382 |
Target: 5'- aGCgCGACGCGcGCCuuagauugcGCCGCgGGCCg- -3' miRNA: 3'- gUGgGCUGUGCuCGG---------CGGCG-CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 126964 | 0.66 | 0.581962 |
Target: 5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3' miRNA: 3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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