Results 1 - 20 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 12 | 0.72 | 0.287223 |
Target: 5'- uCGCaCCGGCACGccauaaCGCCGCGGCCc- -3' miRNA: 3'- -GUG-GGCUGUGCucg---GCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 278 | 0.67 | 0.506773 |
Target: 5'- aACCCGACAucugggcaccCGAGCCcuuCCuCGGUCUCc -3' miRNA: 3'- gUGGGCUGU----------GCUCGGc--GGcGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 2388 | 0.7 | 0.371324 |
Target: 5'- uCGCCCG-CAgGAGcCCGgCGCcGGCCUg -3' miRNA: 3'- -GUGGGCuGUgCUC-GGCgGCG-CCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 3643 | 0.67 | 0.533625 |
Target: 5'- aCAUUCGuCGCGAugGCCGCCgucucgacgauggGCGGCCg- -3' miRNA: 3'- -GUGGGCuGUGCU--CGGCGG-------------CGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 3861 | 0.66 | 0.591561 |
Target: 5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3' miRNA: 3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 5052 | 0.68 | 0.488594 |
Target: 5'- gUACCCuucuGGCAgGGGUCGCaagGCGGCCa- -3' miRNA: 3'- -GUGGG----CUGUgCUCGGCGg--CGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 5210 | 0.69 | 0.394814 |
Target: 5'- gCGCCgCGGCgagGCGaAGCUcuucuuCCGCGGCCUCg -3' miRNA: 3'- -GUGG-GCUG---UGC-UCGGc-----GGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 6226 | 0.73 | 0.234526 |
Target: 5'- -cCCCGcCGCG-GCCGCCGCGagacuugccGCCUCc -3' miRNA: 3'- guGGGCuGUGCuCGGCGGCGC---------CGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7130 | 0.67 | 0.525235 |
Target: 5'- cCGgCCGAC-UGAGCCgacgaaacgugGUCGCGGCCa- -3' miRNA: 3'- -GUgGGCUGuGCUCGG-----------CGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7351 | 0.7 | 0.341519 |
Target: 5'- uCGCaCCGGCaaaaucugGCG-GCCGCCGCGGUUUUc -3' miRNA: 3'- -GUG-GGCUG--------UGCuCGGCGGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7637 | 0.66 | 0.605041 |
Target: 5'- uCGCCCaacCACGAaacGCCGCCuGCcggcucggagggcucGGCCUCc -3' miRNA: 3'- -GUGGGcu-GUGCU---CGGCGG-CG---------------CCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7938 | 0.66 | 0.581962 |
Target: 5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3' miRNA: 3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7985 | 0.69 | 0.410999 |
Target: 5'- -gUCCGuGCACGGGCCGCCauugcGgGGCCg- -3' miRNA: 3'- guGGGC-UGUGCUCGGCGG-----CgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 8021 | 0.69 | 0.394814 |
Target: 5'- gCGCCCGcCACGAcggcGCCaCCGCGcCCUCc -3' miRNA: 3'- -GUGGGCuGUGCU----CGGcGGCGCcGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 8293 | 0.71 | 0.327278 |
Target: 5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3' miRNA: 3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 9067 | 0.69 | 0.428428 |
Target: 5'- gACCCGACGCGcugaggacgagcgauGCCaGCUGgGGCCg- -3' miRNA: 3'- gUGGGCUGUGCu--------------CGG-CGGCgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 9697 | 0.66 | 0.598295 |
Target: 5'- gCGCCuCGACGCuguuucgcgccgcuGAGCCauugugcccGCCGCGGCa-- -3' miRNA: 3'- -GUGG-GCUGUG--------------CUCGG---------CGGCGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 9818 | 0.65 | 0.609865 |
Target: 5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3' miRNA: 3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 10042 | 0.67 | 0.524305 |
Target: 5'- uCACCUGGgcugUGCGAGCCcaucauaacugcaGCCGCGGCg-- -3' miRNA: 3'- -GUGGGCU----GUGCUCGG-------------CGGCGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 10827 | 0.66 | 0.581962 |
Target: 5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3' miRNA: 3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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