miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 12 0.72 0.287223
Target:  5'- uCGCaCCGGCACGccauaaCGCCGCGGCCc- -3'
miRNA:   3'- -GUG-GGCUGUGCucg---GCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 278 0.67 0.506773
Target:  5'- aACCCGACAucugggcaccCGAGCCcuuCCuCGGUCUCc -3'
miRNA:   3'- gUGGGCUGU----------GCUCGGc--GGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 2388 0.7 0.371324
Target:  5'- uCGCCCG-CAgGAGcCCGgCGCcGGCCUg -3'
miRNA:   3'- -GUGGGCuGUgCUC-GGCgGCG-CCGGAg -5'
24350 3' -63.8 NC_005264.1 + 3643 0.67 0.533625
Target:  5'- aCAUUCGuCGCGAugGCCGCCgucucgacgauggGCGGCCg- -3'
miRNA:   3'- -GUGGGCuGUGCU--CGGCGG-------------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 3861 0.66 0.591561
Target:  5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3'
miRNA:   3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 5052 0.68 0.488594
Target:  5'- gUACCCuucuGGCAgGGGUCGCaagGCGGCCa- -3'
miRNA:   3'- -GUGGG----CUGUgCUCGGCGg--CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 5210 0.69 0.394814
Target:  5'- gCGCCgCGGCgagGCGaAGCUcuucuuCCGCGGCCUCg -3'
miRNA:   3'- -GUGG-GCUG---UGC-UCGGc-----GGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 6226 0.73 0.234526
Target:  5'- -cCCCGcCGCG-GCCGCCGCGagacuugccGCCUCc -3'
miRNA:   3'- guGGGCuGUGCuCGGCGGCGC---------CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 7130 0.67 0.525235
Target:  5'- cCGgCCGAC-UGAGCCgacgaaacgugGUCGCGGCCa- -3'
miRNA:   3'- -GUgGGCUGuGCUCGG-----------CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 7351 0.7 0.341519
Target:  5'- uCGCaCCGGCaaaaucugGCG-GCCGCCGCGGUUUUc -3'
miRNA:   3'- -GUG-GGCUG--------UGCuCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 7637 0.66 0.605041
Target:  5'- uCGCCCaacCACGAaacGCCGCCuGCcggcucggagggcucGGCCUCc -3'
miRNA:   3'- -GUGGGcu-GUGCU---CGGCGG-CG---------------CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 7938 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 7985 0.69 0.410999
Target:  5'- -gUCCGuGCACGGGCCGCCauugcGgGGCCg- -3'
miRNA:   3'- guGGGC-UGUGCUCGGCGG-----CgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 8021 0.69 0.394814
Target:  5'- gCGCCCGcCACGAcggcGCCaCCGCGcCCUCc -3'
miRNA:   3'- -GUGGGCuGUGCU----CGGcGGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 8293 0.71 0.327278
Target:  5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3'
miRNA:   3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 9067 0.69 0.428428
Target:  5'- gACCCGACGCGcugaggacgagcgauGCCaGCUGgGGCCg- -3'
miRNA:   3'- gUGGGCUGUGCu--------------CGG-CGGCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 9697 0.66 0.598295
Target:  5'- gCGCCuCGACGCuguuucgcgccgcuGAGCCauugugcccGCCGCGGCa-- -3'
miRNA:   3'- -GUGG-GCUGUG--------------CUCGG---------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 9818 0.65 0.609865
Target:  5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3'
miRNA:   3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 10042 0.67 0.524305
Target:  5'- uCACCUGGgcugUGCGAGCCcaucauaacugcaGCCGCGGCg-- -3'
miRNA:   3'- -GUGGGCU----GUGCUCGG-------------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 10827 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.