miRNA display CGI


Results 21 - 40 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 10981 0.66 0.553382
Target:  5'- aCGCCCccCACGugucGCCGCCggagcgGCGGCCcCa -3'
miRNA:   3'- -GUGGGcuGUGCu---CGGCGG------CGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 12304 0.68 0.453198
Target:  5'- cCGCCCGAgcCugGAGCCGCCuGaccuuCCUCg -3'
miRNA:   3'- -GUGGGCU--GugCUCGGCGG-Cgcc--GGAG- -5'
24350 3' -63.8 NC_005264.1 + 12679 0.67 0.525235
Target:  5'- --aCCG-CACGGGuCCGUCGCGGaCCa- -3'
miRNA:   3'- gugGGCuGUGCUC-GGCGGCGCC-GGag -5'
24350 3' -63.8 NC_005264.1 + 12887 0.79 0.086959
Target:  5'- gACCCGGacggaccguCGAGCCGCC-CGGCCUCg -3'
miRNA:   3'- gUGGGCUgu-------GCUCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 13415 0.7 0.341519
Target:  5'- cCGCaCCGGCGCGcGaCCGCCGCcGCCg- -3'
miRNA:   3'- -GUG-GGCUGUGCuC-GGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 14538 0.68 0.453198
Target:  5'- aACaCCGGCGCGca-CGCgCGCGGUCUCc -3'
miRNA:   3'- gUG-GGCUGUGCucgGCG-GCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 15139 0.67 0.534561
Target:  5'- --aCCGACACGGGCaaucgCGuuGCGGCg-- -3'
miRNA:   3'- gugGGCUGUGCUCG-----GCggCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 16471 0.74 0.204089
Target:  5'- -uUCCGACgACGcAGCCGCgGUGGCCUg -3'
miRNA:   3'- guGGGCUG-UGC-UCGGCGgCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 16692 0.68 0.43603
Target:  5'- gGCaUCGACACGAagacGUgGUCGCGGuCCUCg -3'
miRNA:   3'- gUG-GGCUGUGCU----CGgCGGCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 17676 0.67 0.534561
Target:  5'- aGCCUcaGGCGC-AGCCgagGCCGCGGCggCUCg -3'
miRNA:   3'- gUGGG--CUGUGcUCGG---CGGCGCCG--GAG- -5'
24350 3' -63.8 NC_005264.1 + 18000 0.67 0.515971
Target:  5'- gGCaCCGGCucugacggcgGCGGGUCgGCCGCGGUCa- -3'
miRNA:   3'- gUG-GGCUG----------UGCUCGG-CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 18044 0.68 0.470727
Target:  5'- --gCCGACGCGaAGCggcggCGCCGCGaGCCa- -3'
miRNA:   3'- gugGGCUGUGC-UCG-----GCGGCGC-CGGag -5'
24350 3' -63.8 NC_005264.1 + 18213 0.71 0.293621
Target:  5'- uUACCUGACACGAGCgGCuagcuagugaCGCgGGCCg- -3'
miRNA:   3'- -GUGGGCUGUGCUCGgCG----------GCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 19871 0.75 0.172964
Target:  5'- uGCCCGA---GAGaCCGCCGCGGCCg- -3'
miRNA:   3'- gUGGGCUgugCUC-GGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 20045 0.66 0.562867
Target:  5'- gGCCUGGCAUGucGCCa-CGCGGCCcCg -3'
miRNA:   3'- gUGGGCUGUGCu-CGGcgGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 20236 0.7 0.348806
Target:  5'- aGCCCGGCGUG-GCCaucGUCGCGGCCg- -3'
miRNA:   3'- gUGGGCUGUGCuCGG---CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 20236 0.71 0.313482
Target:  5'- cCGCgCGugACGGGUgggcagggguugCGgCGCGGCCUCg -3'
miRNA:   3'- -GUGgGCugUGCUCG------------GCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 21348 0.68 0.470727
Target:  5'- gCugCCGuucguCcCGGGCCGCCuCGGCCg- -3'
miRNA:   3'- -GugGGCu----GuGCUCGGCGGcGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 22141 0.66 0.553382
Target:  5'- aGCgCGACGCGcGCCuuagauugcGCCGCgGGCCg- -3'
miRNA:   3'- gUGgGCUGUGCuCGG---------CGGCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 22282 0.67 0.513204
Target:  5'- aACCCG-CGCGcGCCcuucugccaucccaGCCGCG-CCUCa -3'
miRNA:   3'- gUGGGCuGUGCuCGG--------------CGGCGCcGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.