miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 24229 0.66 0.599258
Target:  5'- cCACCUGACgAUGAcuugcaccccaccGCUGCCGCGGaagucaaCCUUa -3'
miRNA:   3'- -GUGGGCUG-UGCU-------------CGGCGGCGCC-------GGAG- -5'
24350 3' -63.8 NC_005264.1 + 26363 0.7 0.369793
Target:  5'- gCGCCgCGGCaggcugcGCGGcGCCGUcucugagCGCGGCCUCa -3'
miRNA:   3'- -GUGG-GCUG-------UGCU-CGGCG-------GCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 27264 0.73 0.234526
Target:  5'- cCACCCGuaguCGCGAGCgaCG-CGCGGCUUCu -3'
miRNA:   3'- -GUGGGCu---GUGCUCG--GCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 27977 0.68 0.470727
Target:  5'- aCGCgUGACgACGAccGCCguaGCCGCGGCCcaUCg -3'
miRNA:   3'- -GUGgGCUG-UGCU--CGG---CGGCGCCGG--AG- -5'
24350 3' -63.8 NC_005264.1 + 33961 0.67 0.515971
Target:  5'- gCGCCCGAUAgGGGCCGCUugacCCUCu -3'
miRNA:   3'- -GUGGGCUGUgCUCGGCGGcgccGGAG- -5'
24350 3' -63.8 NC_005264.1 + 34747 0.69 0.427588
Target:  5'- -uCCCGGCGCGccGGUCGCCGCuGUCg- -3'
miRNA:   3'- guGGGCUGUGC--UCGGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 35270 0.68 0.43603
Target:  5'- aACaCUGGCGCGGGCgCgGCCGUGGuCCUg -3'
miRNA:   3'- gUG-GGCUGUGCUCG-G-CGGCGCC-GGAg -5'
24350 3' -63.8 NC_005264.1 + 35469 0.82 0.055106
Target:  5'- uCGCCUGACGCGAGagUGCCGCGGCCg- -3'
miRNA:   3'- -GUGGGCUGUGCUCg-GCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 35568 0.71 0.293621
Target:  5'- aCGCCagcgaagaGGgGgGAGCUGCUGCGGCUUCg -3'
miRNA:   3'- -GUGGg-------CUgUgCUCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 35827 0.7 0.371324
Target:  5'- aACCaCGAUGCGAGuuGCCGCGugggcaGCgUCa -3'
miRNA:   3'- gUGG-GCUGUGCUCggCGGCGC------CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 36552 0.66 0.601185
Target:  5'- gCGCCCGAaaGCGgcauGGCCGCCuccGCGGaCCa- -3'
miRNA:   3'- -GUGGGCUg-UGC----UCGGCGG---CGCC-GGag -5'
24350 3' -63.8 NC_005264.1 + 36804 0.73 0.234526
Target:  5'- gUACUgGAgAgGAGCCGCCGCgGGCCa- -3'
miRNA:   3'- -GUGGgCUgUgCUCGGCGGCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 36977 0.69 0.394814
Target:  5'- gCGCgCUGGCGCcauAGUCGCCGCcGCCUCc -3'
miRNA:   3'- -GUG-GGCUGUGc--UCGGCGGCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 37126 0.66 0.581962
Target:  5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3'
miRNA:   3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 38518 0.69 0.394814
Target:  5'- uCGCCCGcccCACGggucAGCCGCCGCcccgccguccGGCCg- -3'
miRNA:   3'- -GUGGGCu--GUGC----UCGGCGGCG----------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 39104 0.66 0.581962
Target:  5'- uGCCCGuGCACGccuacguGuuGCUGCgcuucGGCCUCu -3'
miRNA:   3'- gUGGGC-UGUGCu------CggCGGCG-----CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 39188 0.73 0.223978
Target:  5'- gGCCCGGCGauuuuCGAgaacgcgccuacGCCGCCGCGGCgCUg -3'
miRNA:   3'- gUGGGCUGU-----GCU------------CGGCGGCGCCG-GAg -5'
24350 3' -63.8 NC_005264.1 + 39621 0.69 0.386878
Target:  5'- uGCUCcuaGACACGGcgcugugguuuuGCCG-CGCGGCCUCg -3'
miRNA:   3'- gUGGG---CUGUGCU------------CGGCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 39836 0.66 0.601185
Target:  5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3'
miRNA:   3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 40147 0.67 0.533625
Target:  5'- --gCCGAgACG-GCCGCCcaucgucgagacgGCGGCCaUCg -3'
miRNA:   3'- gugGGCUgUGCuCGGCGG-------------CGCCGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.