miRNA display CGI


Results 61 - 80 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 40539 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 42274 0.66 0.572396
Target:  5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3'
miRNA:   3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 43899 0.68 0.453198
Target:  5'- gCGCCgGAgACGAuagcGCgGCCGUcGCCUCg -3'
miRNA:   3'- -GUGGgCUgUGCU----CGgCGGCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 44663 0.66 0.572396
Target:  5'- gCGCCaaguuCgACGAGCCGCCagacauggGCGGCCa- -3'
miRNA:   3'- -GUGGgcu--G-UGCUCGGCGG--------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 44791 0.73 0.245489
Target:  5'- gUugCCGACGCcgcGGUCGCCGCGGCaaacCUCc -3'
miRNA:   3'- -GugGGCUGUGc--UCGGCGGCGCCG----GAG- -5'
24350 3' -63.8 NC_005264.1 + 45883 0.69 0.4061
Target:  5'- uCGgCCGcCACGAacuucaguguauugcGCCGCCGCGGCa-- -3'
miRNA:   3'- -GUgGGCuGUGCU---------------CGGCGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 46398 0.66 0.601185
Target:  5'- -cCCCGAU-CGucGCCcCCGCGGCCa- -3'
miRNA:   3'- guGGGCUGuGCu-CGGcGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 46423 0.7 0.341519
Target:  5'- aCGCCCccaGCGAcCUGCCGCGGgCUCa -3'
miRNA:   3'- -GUGGGcugUGCUcGGCGGCGCCgGAG- -5'
24350 3' -63.8 NC_005264.1 + 46838 0.66 0.591561
Target:  5'- aUACCCGACAgaGGGCgaCGCaCaCGGCCUg -3'
miRNA:   3'- -GUGGGCUGUg-CUCG--GCG-GcGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 48934 0.71 0.320324
Target:  5'- uCGCCCGAUgggcacuuguGCGGGCCGCUGCGcuCCa- -3'
miRNA:   3'- -GUGGGCUG----------UGCUCGGCGGCGCc-GGag -5'
24350 3' -63.8 NC_005264.1 + 49925 0.68 0.453198
Target:  5'- aGCUCGACACaaaagcguugGAGCCGuuGaacgaGGCCUg -3'
miRNA:   3'- gUGGGCUGUG----------CUCGGCggCg----CCGGAg -5'
24350 3' -63.8 NC_005264.1 + 55717 0.68 0.470727
Target:  5'- cCGCCUaGACAgGAGU--CCGCGGCUUCu -3'
miRNA:   3'- -GUGGG-CUGUgCUCGgcGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 55828 0.67 0.497646
Target:  5'- aGCCgGugGCGGcGCgGCUGacugGGCCUCa -3'
miRNA:   3'- gUGGgCugUGCU-CGgCGGCg---CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 57988 0.66 0.562867
Target:  5'- -cCCCG-CGCG-GCgGCCGUGGCUc- -3'
miRNA:   3'- guGGGCuGUGCuCGgCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 59522 0.67 0.506773
Target:  5'- gGCUCGAgaCACGAGacuCCuaCGCGGUCUCu -3'
miRNA:   3'- gUGGGCU--GUGCUC---GGcgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 61486 0.72 0.274756
Target:  5'- gCGCgCCGACGC--GCC-CCGCGGUCUCg -3'
miRNA:   3'- -GUG-GGCUGUGcuCGGcGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 62740 0.68 0.461919
Target:  5'- aACCgCGucguCGCuGAGCC-CCGCGGCCg- -3'
miRNA:   3'- gUGG-GCu---GUG-CUCGGcGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 62808 0.81 0.065864
Target:  5'- cCACCgGACGCagcagcGCCGCCGCGGCCUUc -3'
miRNA:   3'- -GUGGgCUGUGcu----CGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 63079 0.73 0.245489
Target:  5'- aGCUCGGCGaGGGCCGUCGCGGaaaggccuaCCUCg -3'
miRNA:   3'- gUGGGCUGUgCUCGGCGGCGCC---------GGAG- -5'
24350 3' -63.8 NC_005264.1 + 64404 0.68 0.467193
Target:  5'- aGCCCGGCcaaggccgacgccGCGGGCacggcgaugacgucUGCCGCGGCuCUa -3'
miRNA:   3'- gUGGGCUG-------------UGCUCG--------------GCGGCGCCG-GAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.