Results 61 - 80 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 65233 | 0.7 | 0.379048 |
Target: 5'- --aCUGAgcCGuAGCCGCCGCGGCCg- -3' miRNA: 3'- gugGGCUguGC-UCGGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 39621 | 0.69 | 0.386878 |
Target: 5'- uGCUCcuaGACACGGcgcugugguuuuGCCG-CGCGGCCUCg -3' miRNA: 3'- gUGGG---CUGUGCU------------CGGCgGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 38518 | 0.69 | 0.394814 |
Target: 5'- uCGCCCGcccCACGggucAGCCGCCGCcccgccguccGGCCg- -3' miRNA: 3'- -GUGGGCu--GUGC----UCGGCGGCG----------CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 5210 | 0.69 | 0.394814 |
Target: 5'- gCGCCgCGGCgagGCGaAGCUcuucuuCCGCGGCCUCg -3' miRNA: 3'- -GUGG-GCUG---UGC-UCGGc-----GGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 157545 | 0.69 | 0.394814 |
Target: 5'- uCGCCCGcccCACGggucAGCCGCCGCcccgccguccGGCCg- -3' miRNA: 3'- -GUGGGCu--GUGC----UCGGCGGCG----------CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 8021 | 0.69 | 0.394814 |
Target: 5'- gCGCCCGcCACGAcggcGCCaCCGCGcCCUCc -3' miRNA: 3'- -GUGGGCuGUGCU----CGGcGGCGCcGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 36977 | 0.69 | 0.394814 |
Target: 5'- gCGCgCUGGCGCcauAGUCGCCGCcGCCUCc -3' miRNA: 3'- -GUG-GGCUGUGc--UCGGCGGCGcCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 156004 | 0.69 | 0.394814 |
Target: 5'- gCGCgCUGGCGCcauAGUCGCCGCcGCCUCc -3' miRNA: 3'- -GUG-GGCUGUGc--UCGGCGGCGcCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 124237 | 0.69 | 0.394814 |
Target: 5'- gCGCCgCGGCgagGCGaAGCUcuucuuCCGCGGCCUCg -3' miRNA: 3'- -GUGG-GCUG---UGC-UCGGc-----GGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 127048 | 0.69 | 0.394814 |
Target: 5'- gCGCCCGcCACGAcggcGCCaCCGCGcCCUCc -3' miRNA: 3'- -GUGGGCuGUGCU----CGGcGGCGCcGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 100006 | 0.69 | 0.402855 |
Target: 5'- aACgCGACGCGgaaauaaagaaGGCCGCgGCGGCgCUg -3' miRNA: 3'- gUGgGCUGUGC-----------UCGGCGgCGCCG-GAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 103124 | 0.69 | 0.402855 |
Target: 5'- -gUCCGGCGCGguAGCCGCCggcGCGGCg-- -3' miRNA: 3'- guGGGCUGUGC--UCGGCGG---CGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 45883 | 0.69 | 0.4061 |
Target: 5'- uCGgCCGcCACGAacuucaguguauugcGCCGCCGCGGCa-- -3' miRNA: 3'- -GUgGGCuGUGCU---------------CGGCGGCGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7985 | 0.69 | 0.410999 |
Target: 5'- -gUCCGuGCACGGGCCGCCauugcGgGGCCg- -3' miRNA: 3'- guGGGC-UGUGCUCGGCGG-----CgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 127012 | 0.69 | 0.410999 |
Target: 5'- -gUCCGuGCACGGGCCGCCauugcGgGGCCg- -3' miRNA: 3'- guGGGC-UGUGCUCGGCGG-----CgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 34747 | 0.69 | 0.427588 |
Target: 5'- -uCCCGGCGCGccGGUCGCCGCuGUCg- -3' miRNA: 3'- guGGGCUGUGC--UCGGCGGCGcCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 117188 | 0.69 | 0.427588 |
Target: 5'- gCGCuuGGCGCcuAGCCGCCGCGuCgUCa -3' miRNA: 3'- -GUGggCUGUGc-UCGGCGGCGCcGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 132553 | 0.69 | 0.427588 |
Target: 5'- aACCUGACGaacCGuucGUCGUCGCGGCCg- -3' miRNA: 3'- gUGGGCUGU---GCu--CGGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 127356 | 0.69 | 0.427588 |
Target: 5'- aAgCCGuCGCGAuCgGCCGCGGCaCUCu -3' miRNA: 3'- gUgGGCuGUGCUcGgCGGCGCCG-GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 141446 | 0.69 | 0.427588 |
Target: 5'- cCACCCucuccaucGAgGCGAGCgGCgG-GGCCUCu -3' miRNA: 3'- -GUGGG--------CUgUGCUCGgCGgCgCCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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