miRNA display CGI


Results 41 - 60 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 86492 0.71 0.320324
Target:  5'- gCGCCUG-CGCGcAGUCGCCgcGCGGCCa- -3'
miRNA:   3'- -GUGGGCuGUGC-UCGGCGG--CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 8293 0.71 0.327278
Target:  5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3'
miRNA:   3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 127320 0.71 0.327278
Target:  5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3'
miRNA:   3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 69079 0.7 0.341519
Target:  5'- uCGCCaGAUGCGAucucGCgGUCGUGGCCUCu -3'
miRNA:   3'- -GUGGgCUGUGCU----CGgCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 7351 0.7 0.341519
Target:  5'- uCGCaCCGGCaaaaucugGCG-GCCGCCGCGGUUUUc -3'
miRNA:   3'- -GUG-GGCUG--------UGCuCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 46423 0.7 0.341519
Target:  5'- aCGCCCccaGCGAcCUGCCGCGGgCUCa -3'
miRNA:   3'- -GUGGGcugUGCUcGGCGGCGCCgGAG- -5'
24350 3' -63.8 NC_005264.1 + 132442 0.7 0.341519
Target:  5'- cCGCaCCGGCGCGcGaCCGCCGCcGCCg- -3'
miRNA:   3'- -GUG-GGCUGUGCuC-GGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 13415 0.7 0.341519
Target:  5'- cCGCaCCGGCGCGcGaCCGCCGCcGCCg- -3'
miRNA:   3'- -GUG-GGCUGUGCuC-GGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 70940 0.7 0.348806
Target:  5'- gCGCCCGccCAUc-GCUGCCGCGGCCa- -3'
miRNA:   3'- -GUGGGCu-GUGcuCGGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 20236 0.7 0.348806
Target:  5'- aGCCCGGCGUG-GCCaucGUCGCGGCCg- -3'
miRNA:   3'- gUGGGCUGUGCuCGG---CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 145275 0.7 0.363709
Target:  5'- aUugCUGGCACGGGgagGCCGCGGUCUa -3'
miRNA:   3'- -GugGGCUGUGCUCgg-CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 95355 0.7 0.363709
Target:  5'- gACUCGGCGgGgcGGCgGCC-CGGCCUCg -3'
miRNA:   3'- gUGGGCUGUgC--UCGgCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 155424 0.7 0.369028
Target:  5'- cCACCCGGCgcacgaaccaauggACGAcGgCGCCGgGGCCg- -3'
miRNA:   3'- -GUGGGCUG--------------UGCU-CgGCGGCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 26363 0.7 0.369793
Target:  5'- gCGCCgCGGCaggcugcGCGGcGCCGUcucugagCGCGGCCUCa -3'
miRNA:   3'- -GUGG-GCUG-------UGCU-CGGCG-------GCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 102221 0.7 0.371324
Target:  5'- uGCuCCuGCGCGAGCCggcuGCCGCGGCa-- -3'
miRNA:   3'- gUG-GGcUGUGCUCGG----CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 124161 0.7 0.371324
Target:  5'- uGCUgGGCaACGuggugaugggcGCCGCCGCGGCCaUCa -3'
miRNA:   3'- gUGGgCUG-UGCu----------CGGCGGCGCCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 121415 0.7 0.371324
Target:  5'- uCGCCCG-CAgGAGcCCGgCGCcGGCCUg -3'
miRNA:   3'- -GUGGGCuGUgCUC-GGCgGCG-CCGGAg -5'
24350 3' -63.8 NC_005264.1 + 35827 0.7 0.371324
Target:  5'- aACCaCGAUGCGAGuuGCCGCGugggcaGCgUCa -3'
miRNA:   3'- gUGG-GCUGUGCUCggCGGCGC------CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 2388 0.7 0.371324
Target:  5'- uCGCCCG-CAgGAGcCCGgCGCcGGCCUg -3'
miRNA:   3'- -GUGGGCuGUgCUC-GGCgGCG-CCGGAg -5'
24350 3' -63.8 NC_005264.1 + 133688 0.7 0.379048
Target:  5'- uGCUCGcCGCGGuccuuGCCGCCGCGcacuggugcuGCCUCu -3'
miRNA:   3'- gUGGGCuGUGCU-----CGGCGGCGC----------CGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.