miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 131331 0.68 0.453198
Target:  5'- cCGCCCGAgcCugGAGCCGCCuGaccuuCCUCg -3'
miRNA:   3'- -GUGGGCU--GugCUCGGCGG-Cgcc--GGAG- -5'
24350 3' -63.8 NC_005264.1 + 129853 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 129481 0.67 0.506773
Target:  5'- aACCCGACuCGAGaUUGCgGCGGCg-- -3'
miRNA:   3'- gUGGGCUGuGCUC-GGCGgCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 128844 0.65 0.609865
Target:  5'- gGCCgGcuACAUGGGCCGCCGCacguucgcgagagGGUCa- -3'
miRNA:   3'- gUGGgC--UGUGCUCGGCGGCG-------------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 128724 0.66 0.590599
Target:  5'- gCGCCuCGACGCuguuucggccgcuGAGCCauugugcccGCCGCGGCa-- -3'
miRNA:   3'- -GUGG-GCUGUG-------------CUCGG---------CGGCGCCGgag -5'
24350 3' -63.8 NC_005264.1 + 128094 0.69 0.428428
Target:  5'- gACCCGACGCGcugaggacgagcgauGCCaGCUGgGGCCg- -3'
miRNA:   3'- gUGGGCUGUGCu--------------CGG-CGGCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 127825 0.67 0.534561
Target:  5'- -uCCCGACAgCGuugccuCCGCgGCGGCCg- -3'
miRNA:   3'- guGGGCUGU-GCuc----GGCGgCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 127356 0.69 0.427588
Target:  5'- aAgCCGuCGCGAuCgGCCGCGGCaCUCu -3'
miRNA:   3'- gUgGGCuGUGCUcGgCGGCGCCG-GAG- -5'
24350 3' -63.8 NC_005264.1 + 127320 0.71 0.327278
Target:  5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3'
miRNA:   3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 127048 0.69 0.394814
Target:  5'- gCGCCCGcCACGAcggcGCCaCCGCGcCCUCc -3'
miRNA:   3'- -GUGGGCuGUGCU----CGGcGGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 127012 0.69 0.410999
Target:  5'- -gUCCGuGCACGGGCCGCCauugcGgGGCCg- -3'
miRNA:   3'- guGGGC-UGUGCUCGGCGG-----CgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 126964 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 126664 0.66 0.605041
Target:  5'- uCGCCCaacCACGAaacGCCGCCuGCcggcucggagggcucGGCCUCc -3'
miRNA:   3'- -GUGGGcu-GUGCU---CGGCGG-CG---------------CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 126157 0.67 0.525235
Target:  5'- cCGgCCGAC-UGAGCCgacgaaacgugGUCGCGGCCa- -3'
miRNA:   3'- -GUgGGCUGuGCUCGG-----------CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 125306 0.68 0.453198
Target:  5'- uCGCCUGACGCuuGCaagaCGCCGCaGCUUCu -3'
miRNA:   3'- -GUGGGCUGUGcuCG----GCGGCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 125253 0.73 0.234526
Target:  5'- -cCCCGcCGCG-GCCGCCGCGagacuugccGCCUCc -3'
miRNA:   3'- guGGGCuGUGCuCGGCGGCGC---------CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 124425 0.72 0.287223
Target:  5'- aACUCGcagaGCGCGuGCU-CCGCGGCCUCg -3'
miRNA:   3'- gUGGGC----UGUGCuCGGcGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 124237 0.69 0.394814
Target:  5'- gCGCCgCGGCgagGCGaAGCUcuucuuCCGCGGCCUCg -3'
miRNA:   3'- -GUGG-GCUG---UGC-UCGGc-----GGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 124161 0.7 0.371324
Target:  5'- uGCUgGGCaACGuggugaugggcGCCGCCGCGGCCaUCa -3'
miRNA:   3'- gUGGgCUG-UGCu----------CGGCGGCGCCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 124079 0.68 0.488594
Target:  5'- gUACCCuucuGGCAgGGGUCGCaagGCGGCCa- -3'
miRNA:   3'- -GUGGG----CUGUgCUCGGCGg--CGCCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.