miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 145275 0.7 0.363709
Target:  5'- aUugCUGGCACGGGgagGCCGCGGUCUa -3'
miRNA:   3'- -GugGGCUGUGCUCgg-CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 145146 1.09 0.00065
Target:  5'- aCACCCGACACGAGCCGCCGCGGCCUCg -3'
miRNA:   3'- -GUGGGCUGUGCUCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 144784 0.67 0.525235
Target:  5'- gCGCCCuGGCucGCGGcGCCGCCGCuucGCgUCg -3'
miRNA:   3'- -GUGGG-CUG--UGCU-CGGCGGCGc--CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 144290 0.66 0.581962
Target:  5'- cCGCuCCGAC-UGAcGCCGgCGCGcCCUCa -3'
miRNA:   3'- -GUG-GGCUGuGCU-CGGCgGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 142952 0.78 0.111592
Target:  5'- gCACCCGaaauggcuaGCGCG-GCCGCgGCGGUCUCu -3'
miRNA:   3'- -GUGGGC---------UGUGCuCGGCGgCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 141602 0.73 0.251128
Target:  5'- aCACUCGAgccgucgucaaCGCGgaaAGCCGUCGCGGCCg- -3'
miRNA:   3'- -GUGGGCU-----------GUGC---UCGGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 141446 0.69 0.427588
Target:  5'- cCACCCucuccaucGAgGCGAGCgGCgG-GGCCUCu -3'
miRNA:   3'- -GUGGG--------CUgUGCUCGgCGgCgCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 139964 0.66 0.595408
Target:  5'- uGCCCGAacCAgGGGUcuauuucgauagguuCG-CGCGGCCUCg -3'
miRNA:   3'- gUGGGCU--GUgCUCG---------------GCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 138671 0.67 0.534561
Target:  5'- --aCCGAcCGCG-GCCGCaGCaGCCUCg -3'
miRNA:   3'- gugGGCU-GUGCuCGGCGgCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 137509 0.66 0.585798
Target:  5'- aACUCGuC-CG-GCCGCCGgauuuuuugcuagguCGGCCUCg -3'
miRNA:   3'- gUGGGCuGuGCuCGGCGGC---------------GCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 136724 0.75 0.18575
Target:  5'- gGCCCGcgcCACGAGCCGCgCGgUGGCCa- -3'
miRNA:   3'- gUGGGCu--GUGCUCGGCG-GC-GCCGGag -5'
24350 3' -63.8 NC_005264.1 + 136675 0.66 0.562867
Target:  5'- --gCCGACA-GuGCCgcgaaaguccucGCCGCGGCCUg -3'
miRNA:   3'- gugGGCUGUgCuCGG------------CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 136405 0.68 0.488594
Target:  5'- --aCCGACaACGc-CCGuCCGCGGUCUCg -3'
miRNA:   3'- gugGGCUG-UGCucGGC-GGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 133983 0.66 0.591561
Target:  5'- aGCCCG-CGCGGGCCGUuuacgauuucuuCGuuGCCUg -3'
miRNA:   3'- gUGGGCuGUGCUCGGCG------------GCgcCGGAg -5'
24350 3' -63.8 NC_005264.1 + 133688 0.7 0.379048
Target:  5'- uGCUCGcCGCGGuccuuGCCGCCGCGcacuggugcuGCCUCu -3'
miRNA:   3'- gUGGGCuGUGCU-----CGGCGGCGC----------CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 132553 0.69 0.427588
Target:  5'- aACCUGACGaacCGuucGUCGUCGCGGCCg- -3'
miRNA:   3'- gUGGGCUGU---GCu--CGGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 132442 0.7 0.341519
Target:  5'- cCGCaCCGGCGCGcGaCCGCCGCcGCCg- -3'
miRNA:   3'- -GUG-GGCUGUGCuC-GGCGGCGcCGGag -5'
24350 3' -63.8 NC_005264.1 + 132404 0.74 0.204089
Target:  5'- gGCCgcaGGCACGAGCUacaaGCCGCGGCUg- -3'
miRNA:   3'- gUGGg--CUGUGCUCGG----CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 131913 0.79 0.086959
Target:  5'- gACCCGGacggaccguCGAGCCGCC-CGGCCUCg -3'
miRNA:   3'- gUGGGCUgu-------GCUCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 131706 0.67 0.525235
Target:  5'- --aCCG-CACGGGuCCGUCGCGGaCCa- -3'
miRNA:   3'- gugGGCuGUGCUC-GGCGGCGCC-GGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.