miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 7351 0.7 0.341519
Target:  5'- uCGCaCCGGCaaaaucugGCG-GCCGCCGCGGUUUUc -3'
miRNA:   3'- -GUG-GGCUG--------UGCuCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 35469 0.82 0.055106
Target:  5'- uCGCCUGACGCGAGagUGCCGCGGCCg- -3'
miRNA:   3'- -GUGGGCUGUGCUCg-GCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 83422 0.8 0.078632
Target:  5'- cCGCCC-ACGCuGGGuuCCGCCGCGGCCUCg -3'
miRNA:   3'- -GUGGGcUGUG-CUC--GGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 131913 0.79 0.086959
Target:  5'- gACCCGGacggaccguCGAGCCGCC-CGGCCUCg -3'
miRNA:   3'- gUGGGCUgu-------GCUCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 19871 0.75 0.172964
Target:  5'- uGCCCGA---GAGaCCGCCGCGGCCg- -3'
miRNA:   3'- gUGGGCUgugCUC-GGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 67478 0.74 0.199362
Target:  5'- aACCCGAgGcCGGGCCGCCGCcccGCCg- -3'
miRNA:   3'- gUGGGCUgU-GCUCGGCGGCGc--CGGag -5'
24350 3' -63.8 NC_005264.1 + 108594 0.74 0.213835
Target:  5'- cCACUCGACACGuuggcgcgcggGGCCGCCucgacacaGGCCUCu -3'
miRNA:   3'- -GUGGGCUGUGC-----------UCGGCGGcg------CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 158215 0.73 0.223978
Target:  5'- gGCCCGGCGauuuuCGAgaacgcgccuacGCCGCCGCGGCgCUg -3'
miRNA:   3'- gUGGGCUGU-----GCU------------CGGCGGCGCCG-GAg -5'
24350 3' -63.8 NC_005264.1 + 155830 0.73 0.234526
Target:  5'- gUACUgGAgAgGAGCCGCCGCgGGCCa- -3'
miRNA:   3'- -GUGGgCUgUgCUCGGCGGCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 125253 0.73 0.234526
Target:  5'- -cCCCGcCGCG-GCCGCCGCGagacuugccGCCUCc -3'
miRNA:   3'- guGGGCuGUGCuCGGCGGCGC---------CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 63079 0.73 0.245489
Target:  5'- aGCUCGGCGaGGGCCGUCGCGGaaaggccuaCCUCg -3'
miRNA:   3'- gUGGGCUGUgCUCGGCGGCGCC---------GGAG- -5'
24350 3' -63.8 NC_005264.1 + 141602 0.73 0.251128
Target:  5'- aCACUCGAgccgucgucaaCGCGgaaAGCCGUCGCGGCCg- -3'
miRNA:   3'- -GUGGGCU-----------GUGC---UCGGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 61486 0.72 0.274756
Target:  5'- gCGCgCCGACGC--GCC-CCGCGGUCUCg -3'
miRNA:   3'- -GUG-GGCUGUGcuCGGcGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 12 0.72 0.287223
Target:  5'- uCGCaCCGGCACGccauaaCGCCGCGGCCc- -3'
miRNA:   3'- -GUG-GGCUGUGCucg---GCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 18213 0.71 0.293621
Target:  5'- uUACCUGACACGAGCgGCuagcuagugaCGCgGGCCg- -3'
miRNA:   3'- -GUGGGCUGUGCUCGgCG----------GCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 154595 0.71 0.293621
Target:  5'- aCGCCagcgaagaGGgGgGAGCUGCUGCGGCUUCg -3'
miRNA:   3'- -GUGGg-------CUgUgCUCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 65160 0.71 0.30013
Target:  5'- aCACCgCGGCgGCGcccucucuGGCCaugGCCGCGGCCUUu -3'
miRNA:   3'- -GUGG-GCUG-UGC--------UCGG---CGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 20236 0.71 0.313482
Target:  5'- cCGCgCGugACGGGUgggcagggguugCGgCGCGGCCUCg -3'
miRNA:   3'- -GUGgGCugUGCUCG------------GCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 127320 0.71 0.327278
Target:  5'- gCGCCCgugggcGACGgGGGCaccugCGCCGCGGCgUCg -3'
miRNA:   3'- -GUGGG------CUGUgCUCG-----GCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 69079 0.7 0.341519
Target:  5'- uCGCCaGAUGCGAucucGCgGUCGUGGCCUCu -3'
miRNA:   3'- -GUGGgCUGUGCU----CGgCGGCGCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.