miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 145146 1.09 0.00065
Target:  5'- aCACCCGACACGAGCCGCCGCGGCCUCg -3'
miRNA:   3'- -GUGGGCUGUGCUCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 35469 0.82 0.055106
Target:  5'- uCGCCUGACGCGAGagUGCCGCGGCCg- -3'
miRNA:   3'- -GUGGGCUGUGCUCg-GCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 62808 0.81 0.065864
Target:  5'- cCACCgGACGCagcagcGCCGCCGCGGCCUUc -3'
miRNA:   3'- -GUGGgCUGUGcu----CGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 83422 0.8 0.078632
Target:  5'- cCGCCC-ACGCuGGGuuCCGCCGCGGCCUCg -3'
miRNA:   3'- -GUGGGcUGUG-CUC--GGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 131913 0.79 0.086959
Target:  5'- gACCCGGacggaccguCGAGCCGCC-CGGCCUCg -3'
miRNA:   3'- gUGGGCUgu-------GCUCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 12887 0.79 0.086959
Target:  5'- gACCCGGacggaccguCGAGCCGCC-CGGCCUCg -3'
miRNA:   3'- gUGGGCUgu-------GCUCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 142952 0.78 0.111592
Target:  5'- gCACCCGaaauggcuaGCGCG-GCCGCgGCGGUCUCu -3'
miRNA:   3'- -GUGGGC---------UGUGCuCGGCGgCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 87519 0.77 0.120174
Target:  5'- -uCCgCGAUcgAUGAGCCGcCCGCGGCCUCc -3'
miRNA:   3'- guGG-GCUG--UGCUCGGC-GGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 157307 0.76 0.139207
Target:  5'- aACCCGcuccGCGCGAGaCGCCGCGGCUg- -3'
miRNA:   3'- gUGGGC----UGUGCUCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 19871 0.75 0.172964
Target:  5'- uGCCCGA---GAGaCCGCCGCGGCCg- -3'
miRNA:   3'- gUGGGCUgugCUC-GGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 152764 0.75 0.181398
Target:  5'- -cCCCGGCGgGAGauuCCGCCGCGGCUg- -3'
miRNA:   3'- guGGGCUGUgCUC---GGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 136724 0.75 0.18575
Target:  5'- gGCCCGcgcCACGAGCCGCgCGgUGGCCa- -3'
miRNA:   3'- gUGGGCu--GUGCUCGGCG-GC-GCCGGag -5'
24350 3' -63.8 NC_005264.1 + 120820 0.74 0.194731
Target:  5'- gCGCgUCGACACu-GCCGCCGUGGCCg- -3'
miRNA:   3'- -GUG-GGCUGUGcuCGGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 67478 0.74 0.199362
Target:  5'- aACCCGAgGcCGGGCCGCCGCcccGCCg- -3'
miRNA:   3'- gUGGGCUgU-GCUCGGCGGCGc--CGGag -5'
24350 3' -63.8 NC_005264.1 + 132404 0.74 0.204089
Target:  5'- gGCCgcaGGCACGAGCUacaaGCCGCGGCUg- -3'
miRNA:   3'- gUGGg--CUGUGCUCGG----CGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 16471 0.74 0.204089
Target:  5'- -uUCCGACgACGcAGCCGCgGUGGCCUg -3'
miRNA:   3'- guGGGCUG-UGC-UCGGCGgCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 108594 0.74 0.213835
Target:  5'- cCACUCGACACGuuggcgcgcggGGCCGCCucgacacaGGCCUCu -3'
miRNA:   3'- -GUGGGCUGUGC-----------UCGGCGGcg------CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 39188 0.73 0.223978
Target:  5'- gGCCCGGCGauuuuCGAgaacgcgccuacGCCGCCGCGGCgCUg -3'
miRNA:   3'- gUGGGCUGU-----GCU------------CGGCGGCGCCG-GAg -5'
24350 3' -63.8 NC_005264.1 + 158215 0.73 0.223978
Target:  5'- gGCCCGGCGauuuuCGAgaacgcgccuacGCCGCCGCGGCgCUg -3'
miRNA:   3'- gUGGGCUGU-----GCU------------CGGCGGCGCCG-GAg -5'
24350 3' -63.8 NC_005264.1 + 84195 0.73 0.223978
Target:  5'- gACgaGGCACaGGGCCGCCGCGGCg-- -3'
miRNA:   3'- gUGggCUGUG-CUCGGCGGCGCCGgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.