Results 41 - 55 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 2868 | 0.79 | 0.787832 |
Target: 5'- gCUGcGGCUGCGAUcgACcgg-GGCGCg -3' miRNA: 3'- -GACuCCGAUGCUAuaUGuuaaCCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 101856 | 0.67 | 0.999619 |
Target: 5'- -cGAGGCcGCGAUAguc----GGCGCc -3' miRNA: 3'- gaCUCCGaUGCUAUauguuaaCCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 82627 | 0.67 | 0.999699 |
Target: 5'- -gGAGGg---GAUAUGCGcgUGGCGUu -3' miRNA: 3'- gaCUCCgaugCUAUAUGUuaACCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 118535 | 0.66 | 0.999917 |
Target: 5'- --aGGGCUaucggGCGAUacuacgcgcaaGUGCAuGUUGGCGUg -3' miRNA: 3'- gacUCCGA-----UGCUA-----------UAUGU-UAACCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 140025 | 0.66 | 0.999917 |
Target: 5'- gCUGAGGCUguaccacaACGGUcccucugACAgg-GGCGUg -3' miRNA: 3'- -GACUCCGA--------UGCUAua-----UGUuaaCCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 40694 | 0.66 | 0.999917 |
Target: 5'- -cGAcGGCUACGAc-UACGAagGGgGCc -3' miRNA: 3'- gaCU-CCGAUGCUauAUGUUaaCCgCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 6830 | 0.66 | 0.999891 |
Target: 5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3' miRNA: 3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 140671 | 0.66 | 0.999858 |
Target: 5'- -aGGGGCUGuugUGAcGUACGGcccgcGGCGCa -3' miRNA: 3'- gaCUCCGAU---GCUaUAUGUUaa---CCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 81216 | 0.66 | 0.999858 |
Target: 5'- -cGAGGCaUAUGAgcaucgGCcGUcccUGGCGCa -3' miRNA: 3'- gaCUCCG-AUGCUaua---UGuUA---ACCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 109606 | 0.66 | 0.999816 |
Target: 5'- -cGGGGC-ACGGaaaGCAAaUGGCGUg -3' miRNA: 3'- gaCUCCGaUGCUauaUGUUaACCGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 94613 | 0.66 | 0.999764 |
Target: 5'- ---uGGCUugGcgGUGCGGcgUGGaCGCg -3' miRNA: 3'- gacuCCGAugCuaUAUGUUa-ACC-GCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 112996 | 0.66 | 0.999764 |
Target: 5'- -aGaAGGCUGCGGcGUACGugcucGCGCa -3' miRNA: 3'- gaC-UCCGAUGCUaUAUGUuaac-CGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 43611 | 0.66 | 0.999764 |
Target: 5'- -gGGGGCUACGAUuu-CGAggcucggaaGCGCg -3' miRNA: 3'- gaCUCCGAUGCUAuauGUUaac------CGCG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 93828 | 0.67 | 0.999699 |
Target: 5'- -cGAGGUgGCGGUu--CGGUUGGCcguGCg -3' miRNA: 3'- gaCUCCGaUGCUAuauGUUAACCG---CG- -5' |
|||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 145180 | 1.15 | 0.009867 |
Target: 5'- cCUGAGGCUACGAUAUACAAUUGGCGCg -3' miRNA: 3'- -GACUCCGAUGCUAUAUGUUAACCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home