miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 5' -47.2 NC_005264.1 + 56392 0.72 0.974063
Target:  5'- cCUGAGGCgcgACGAUcgcAUAuCGAgcgcGGCGCc -3'
miRNA:   3'- -GACUCCGa--UGCUA---UAU-GUUaa--CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 137075 0.72 0.974063
Target:  5'- --cAGGCgaaGCGGUGc-CAAUUGGCGCa -3'
miRNA:   3'- gacUCCGa--UGCUAUauGUUAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 162652 0.72 0.981291
Target:  5'- -cGAGGCUcggaagcgcgccgGCGGgucguaggUGUACGGUcGGCGCg -3'
miRNA:   3'- gaCUCCGA-------------UGCU--------AUAUGUUAaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 133281 0.71 0.988792
Target:  5'- -cGGGGCUgGCGAUAaACAAaagGGCGg -3'
miRNA:   3'- gaCUCCGA-UGCUAUaUGUUaa-CCGCg -5'
24350 5' -47.2 NC_005264.1 + 45466 0.68 0.998632
Target:  5'- --aGGGCcGCGAUGaAC--UUGGCGCa -3'
miRNA:   3'- gacUCCGaUGCUAUaUGuuAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 162825 0.68 0.998278
Target:  5'- -cGGGGCgcaguuucugucGCGAUAUAgcg-UGGCGCg -3'
miRNA:   3'- gaCUCCGa-----------UGCUAUAUguuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 142855 0.69 0.997606
Target:  5'- aUGAGGC-ACGuccuUGCGAgcgaaGGCGCu -3'
miRNA:   3'- gACUCCGaUGCuau-AUGUUaa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 4473 0.7 0.995309
Target:  5'- -cGAGGCUaaGCGGaaaccguCAAggGGCGCg -3'
miRNA:   3'- gaCUCCGA--UGCUauau---GUUaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 79211 0.7 0.991473
Target:  5'- cCUGGGGCUAgGcugcGUGCAGgcGGCGg -3'
miRNA:   3'- -GACUCCGAUgCua--UAUGUUaaCCGCg -5'
24350 5' -47.2 NC_005264.1 + 18120 0.71 0.990204
Target:  5'- -aGAGGCUAagaGAcGUGCuugcuGUcUGGCGCg -3'
miRNA:   3'- gaCUCCGAUg--CUaUAUGu----UA-ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 43611 0.66 0.999764
Target:  5'- -gGGGGCUACGAUuu-CGAggcucggaaGCGCg -3'
miRNA:   3'- gaCUCCGAUGCUAuauGUUaac------CGCG- -5'
24350 5' -47.2 NC_005264.1 + 112996 0.66 0.999764
Target:  5'- -aGaAGGCUGCGGcGUACGugcucGCGCa -3'
miRNA:   3'- gaC-UCCGAUGCUaUAUGUuaac-CGCG- -5'
24350 5' -47.2 NC_005264.1 + 94613 0.66 0.999764
Target:  5'- ---uGGCUugGcgGUGCGGcgUGGaCGCg -3'
miRNA:   3'- gacuCCGAugCuaUAUGUUa-ACC-GCG- -5'
24350 5' -47.2 NC_005264.1 + 109606 0.66 0.999816
Target:  5'- -cGGGGC-ACGGaaaGCAAaUGGCGUg -3'
miRNA:   3'- gaCUCCGaUGCUauaUGUUaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 81216 0.66 0.999858
Target:  5'- -cGAGGCaUAUGAgcaucgGCcGUcccUGGCGCa -3'
miRNA:   3'- gaCUCCG-AUGCUaua---UGuUA---ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 140671 0.66 0.999858
Target:  5'- -aGGGGCUGuugUGAcGUACGGcccgcGGCGCa -3'
miRNA:   3'- gaCUCCGAU---GCUaUAUGUUaa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 6830 0.66 0.999891
Target:  5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 40694 0.66 0.999917
Target:  5'- -cGAcGGCUACGAc-UACGAagGGgGCc -3'
miRNA:   3'- gaCU-CCGAUGCUauAUGUUaaCCgCG- -5'
24350 5' -47.2 NC_005264.1 + 140025 0.66 0.999917
Target:  5'- gCUGAGGCUguaccacaACGGUcccucugACAgg-GGCGUg -3'
miRNA:   3'- -GACUCCGA--------UGCUAua-----UGUuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 145180 1.15 0.009867
Target:  5'- cCUGAGGCUACGAUAUACAAUUGGCGCg -3'
miRNA:   3'- -GACUCCGAUGCUAUAUGUUAACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.