miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 5' -47.2 NC_005264.1 + 56918 0.74 0.953056
Target:  5'- aUGGGGCgGCGuacGUGCG--UGGCGCa -3'
miRNA:   3'- gACUCCGaUGCua-UAUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 57481 0.68 0.998877
Target:  5'- cCUGGcGGCggcgGCGAagAUGC---UGGCGCg -3'
miRNA:   3'- -GACU-CCGa---UGCUa-UAUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 64261 0.74 0.939151
Target:  5'- aCUGGGGCUGCGGgc-GCcGUUcaucuugcGGCGCa -3'
miRNA:   3'- -GACUCCGAUGCUauaUGuUAA--------CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 79211 0.7 0.991473
Target:  5'- cCUGGGGCUAgGcugcGUGCAGgcGGCGg -3'
miRNA:   3'- -GACUCCGAUgCua--UAUGUUaaCCGCg -5'
24350 5' -47.2 NC_005264.1 + 81216 0.66 0.999858
Target:  5'- -cGAGGCaUAUGAgcaucgGCcGUcccUGGCGCa -3'
miRNA:   3'- gaCUCCG-AUGCUaua---UGuUA---ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 82039 0.67 0.999619
Target:  5'- --aGGGuCUACGAUGcGCA---GGCGCg -3'
miRNA:   3'- gacUCC-GAUGCUAUaUGUuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 82627 0.67 0.999699
Target:  5'- -gGAGGg---GAUAUGCGcgUGGCGUu -3'
miRNA:   3'- gaCUCCgaugCUAUAUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 93828 0.67 0.999699
Target:  5'- -cGAGGUgGCGGUu--CGGUUGGCcguGCg -3'
miRNA:   3'- gaCUCCGaUGCUAuauGUUAACCG---CG- -5'
24350 5' -47.2 NC_005264.1 + 94613 0.66 0.999764
Target:  5'- ---uGGCUugGcgGUGCGGcgUGGaCGCg -3'
miRNA:   3'- gacuCCGAugCuaUAUGUUa-ACC-GCG- -5'
24350 5' -47.2 NC_005264.1 + 95346 0.67 0.999402
Target:  5'- -cGAGGCaAUGGggccgACGGgcGGCGCg -3'
miRNA:   3'- gaCUCCGaUGCUaua--UGUUaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 95601 0.66 0.999891
Target:  5'- -aGcGGCUACcccGUACAauaAUUGGCGUa -3'
miRNA:   3'- gaCuCCGAUGcuaUAUGU---UAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 101856 0.67 0.999619
Target:  5'- -cGAGGCcGCGAUAguc----GGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUAUauguuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 103940 0.66 0.999926
Target:  5'- -gGAGGCggcauccgcuaugcGCGA---ACGcgUGGCGCu -3'
miRNA:   3'- gaCUCCGa-------------UGCUauaUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 109606 0.66 0.999816
Target:  5'- -cGGGGC-ACGGaaaGCAAaUGGCGUg -3'
miRNA:   3'- gaCUCCGaUGCUauaUGUUaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 112996 0.66 0.999764
Target:  5'- -aGaAGGCUGCGGcGUACGugcucGCGCa -3'
miRNA:   3'- gaC-UCCGAUGCUaUAUGUuaac-CGCG- -5'
24350 5' -47.2 NC_005264.1 + 118535 0.66 0.999917
Target:  5'- --aGGGCUaucggGCGAUacuacgcgcaaGUGCAuGUUGGCGUg -3'
miRNA:   3'- gacUCCGA-----UGCUA-----------UAUGU-UAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 121894 0.79 0.787832
Target:  5'- gCUGcGGCUGCGAUcgACcgg-GGCGCg -3'
miRNA:   3'- -GACuCCGAUGCUAuaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 122645 0.67 0.999402
Target:  5'- -gGGGGCcGCGAgg-GCg---GGCGCg -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 125158 0.69 0.997851
Target:  5'- gUG-GGCUGCGAUGcuuguggGGCGCc -3'
miRNA:   3'- gACuCCGAUGCUAUauguuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 125856 0.66 0.999891
Target:  5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.