miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 5' -47.2 NC_005264.1 + 145180 1.15 0.009867
Target:  5'- cCUGAGGCUACGAUAUACAAUUGGCGCg -3'
miRNA:   3'- -GACUCCGAUGCUAUAUGUUAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 25192 0.68 0.998342
Target:  5'- uCUGAgGGCcGCG---UACGuGUUGGCGCa -3'
miRNA:   3'- -GACU-CCGaUGCuauAUGU-UAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 137272 0.69 0.996616
Target:  5'- gUGuGGUUGCGAUuccGCGgcGUUGGCGg -3'
miRNA:   3'- gACuCCGAUGCUAua-UGU--UAACCGCg -5'
24350 5' -47.2 NC_005264.1 + 64261 0.74 0.939151
Target:  5'- aCUGGGGCUGCGGgc-GCcGUUcaucuugcGGCGCa -3'
miRNA:   3'- -GACUCCGAUGCUauaUGuUAA--------CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 82627 0.67 0.999699
Target:  5'- -gGAGGg---GAUAUGCGcgUGGCGUu -3'
miRNA:   3'- gaCUCCgaugCUAUAUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 95601 0.66 0.999891
Target:  5'- -aGcGGCUACcccGUACAauaAUUGGCGUa -3'
miRNA:   3'- gaCuCCGAUGcuaUAUGU---UAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 11496 0.68 0.998877
Target:  5'- -cGaAGGCcGCGcggcccuugcccAUGUGCAGUuuuUGGCGCa -3'
miRNA:   3'- gaC-UCCGaUGC------------UAUAUGUUA---ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 22751 0.73 0.964644
Target:  5'- gCUG-GGCgaaGCGAUAgcggcggGCAAUgaggGGCGCg -3'
miRNA:   3'- -GACuCCGa--UGCUAUa------UGUUAa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 45466 0.68 0.998632
Target:  5'- --aGGGCcGCGAUGaAC--UUGGCGCa -3'
miRNA:   3'- gacUCCGaUGCUAUaUGuuAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 162825 0.68 0.998278
Target:  5'- -cGGGGCgcaguuucugucGCGAUAUAgcg-UGGCGCg -3'
miRNA:   3'- gaCUCCGa-----------UGCUAUAUguuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 142855 0.69 0.997606
Target:  5'- aUGAGGC-ACGuccuUGCGAgcgaaGGCGCu -3'
miRNA:   3'- gACUCCGaUGCuau-AUGUUaa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 162652 0.72 0.981291
Target:  5'- -cGAGGCUcggaagcgcgccgGCGGgucguaggUGUACGGUcGGCGCg -3'
miRNA:   3'- gaCUCCGA-------------UGCU--------AUAUGUUAaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 82039 0.67 0.999619
Target:  5'- --aGGGuCUACGAUGcGCA---GGCGCg -3'
miRNA:   3'- gacUCC-GAUGCUAUaUGUuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 136434 0.67 0.999699
Target:  5'- uCUGAGGCggaaGA---GCAug-GGCGCu -3'
miRNA:   3'- -GACUCCGaug-CUauaUGUuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 37953 0.66 0.99977
Target:  5'- aUGGGGggGCGGUuagccaguugcgcgGCAcgUGGCGUu -3'
miRNA:   3'- gACUCCgaUGCUAua------------UGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 137075 0.72 0.974063
Target:  5'- --cAGGCgaaGCGGUGc-CAAUUGGCGCa -3'
miRNA:   3'- gacUCCGa--UGCUAUauGUUAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 103940 0.66 0.999926
Target:  5'- -gGAGGCggcauccgcuaugcGCGA---ACGcgUGGCGCu -3'
miRNA:   3'- gaCUCCGa-------------UGCUauaUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 24483 0.66 0.999858
Target:  5'- gUGAcGUUGCGAUAgucGCGuucgGGCGCc -3'
miRNA:   3'- gACUcCGAUGCUAUa--UGUuaa-CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 159720 0.66 0.999917
Target:  5'- -cGAcGGCUACGAc-UACGAagGGgGCc -3'
miRNA:   3'- gaCU-CCGAUGCUauAUGUUaaCCgCG- -5'
24350 5' -47.2 NC_005264.1 + 125856 0.66 0.999891
Target:  5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.