Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24351 | 3' | -56.5 | NC_005264.1 | + | 143913 | 1.09 | 0.002433 |
Target: 5'- gCUGACGCAUAGCUCUCCGCUAGGCCGg -3' miRNA: 3'- -GACUGCGUAUCGAGAGGCGAUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 16327 | 0.8 | 0.226927 |
Target: 5'- -cGACGCGUAGCUCUggaaCCGCgcGGCCc -3' miRNA: 3'- gaCUGCGUAUCGAGA----GGCGauCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 44755 | 0.74 | 0.455669 |
Target: 5'- --aACGUAguuGCUCUCCGCgUAGGCCu -3' miRNA: 3'- gacUGCGUau-CGAGAGGCG-AUCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 80115 | 0.73 | 0.493165 |
Target: 5'- gUGGCGC-UAGCggUCCGCaagGGGCCGc -3' miRNA: 3'- gACUGCGuAUCGagAGGCGa--UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 145166 | 0.72 | 0.571911 |
Target: 5'- gCUGACgagccgGCGUGaCUCUgaguugCCGCUAGGCCGa -3' miRNA: 3'- -GACUG------CGUAUcGAGA------GGCGAUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 144256 | 0.71 | 0.63288 |
Target: 5'- -gGugGCcUGGCUCgCUGCcuUGGGCCGg -3' miRNA: 3'- gaCugCGuAUCGAGaGGCG--AUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 31676 | 0.71 | 0.63288 |
Target: 5'- -cGAgGCAgGGCUCUCgGCgGGGCUGc -3' miRNA: 3'- gaCUgCGUaUCGAGAGgCGaUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 150702 | 0.71 | 0.63288 |
Target: 5'- -cGAgGCAgGGCUCUCgGCgGGGCUGc -3' miRNA: 3'- gaCUgCGUaUCGAGAGgCGaUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 110550 | 0.71 | 0.643084 |
Target: 5'- -aGGCGg--AGCUagCCGCUAGGCCGa -3' miRNA: 3'- gaCUGCguaUCGAgaGGCGAUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 41389 | 0.7 | 0.663456 |
Target: 5'- -gGACGUGUccgcGGC-CUCCGCUuucuuccuaggcAGGCCGg -3' miRNA: 3'- gaCUGCGUA----UCGaGAGGCGA------------UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 160416 | 0.7 | 0.663456 |
Target: 5'- -gGACGUGUccgcGGC-CUCCGCUuucuuccuaggcAGGCCGg -3' miRNA: 3'- gaCUGCGUA----UCGaGAGGCGA------------UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 67686 | 0.69 | 0.723693 |
Target: 5'- -aGGgGCAgaaUAGCUCUgCGCccGGGCCGu -3' miRNA: 3'- gaCUgCGU---AUCGAGAgGCGa-UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 127828 | 0.69 | 0.723693 |
Target: 5'- -cGACaGCGUuGC-CUCCGCggcGGCCGg -3' miRNA: 3'- gaCUG-CGUAuCGaGAGGCGau-CCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 155562 | 0.69 | 0.752876 |
Target: 5'- aCUGGCGg--GGCUCUCCGUcgccaAGGCUa -3' miRNA: 3'- -GACUGCguaUCGAGAGGCGa----UCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 148628 | 0.69 | 0.762404 |
Target: 5'- aUGGCGUu--GUUUUCCGCcguGGCCGa -3' miRNA: 3'- gACUGCGuauCGAGAGGCGau-CCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 58636 | 0.69 | 0.771817 |
Target: 5'- -cGACGCGU-GCUCUgCgGCgAGGUCGa -3' miRNA: 3'- gaCUGCGUAuCGAGA-GgCGaUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 89377 | 0.68 | 0.816849 |
Target: 5'- cCUGACgGCA-AGCg--CCgGCUAGGCCa -3' miRNA: 3'- -GACUG-CGUaUCGagaGG-CGAUCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 132601 | 0.68 | 0.816849 |
Target: 5'- -cGugGCAccGCUUUgCCGCgcuGGCCGc -3' miRNA: 3'- gaCugCGUauCGAGA-GGCGau-CCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 81057 | 0.68 | 0.820286 |
Target: 5'- aCUGGCGCGUGGUUUaucgacggcaaccggUCUGCcgagAGcGCCGg -3' miRNA: 3'- -GACUGCGUAUCGAG---------------AGGCGa---UC-CGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 97059 | 0.67 | 0.825389 |
Target: 5'- --aGCGCAUGG-UCUCCGUgAGGCgGa -3' miRNA: 3'- gacUGCGUAUCgAGAGGCGaUCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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