Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24351 | 3' | -56.5 | NC_005264.1 | + | 8459 | 0.66 | 0.900054 |
Target: 5'- uCUGAC-CAUAGCaUCcgCCaGCUGGGUCc -3' miRNA: 3'- -GACUGcGUAUCG-AGa-GG-CGAUCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 16327 | 0.8 | 0.226927 |
Target: 5'- -cGACGCGUAGCUCUggaaCCGCgcGGCCc -3' miRNA: 3'- gaCUGCGUAUCGAGA----GGCGauCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 24423 | 0.67 | 0.833753 |
Target: 5'- -cGACGCAaAGCacguUCUcgCCGCUAuGGCCc -3' miRNA: 3'- gaCUGCGUaUCG----AGA--GGCGAU-CCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 31676 | 0.71 | 0.63288 |
Target: 5'- -cGAgGCAgGGCUCUCgGCgGGGCUGc -3' miRNA: 3'- gaCUgCGUaUCGAGAGgCGaUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 34322 | 0.67 | 0.865318 |
Target: 5'- cCUGACGC-UGGCUgaCuCGCUgacgcgAGGUCGg -3' miRNA: 3'- -GACUGCGuAUCGAgaG-GCGA------UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 35472 | 0.66 | 0.900054 |
Target: 5'- cCUGACGCGagAGUg--CCGC--GGCCGa -3' miRNA: 3'- -GACUGCGUa-UCGagaGGCGauCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 39633 | 0.67 | 0.841936 |
Target: 5'- -cGGCGCuGUGGUUUUgCCGCgcGGCCu -3' miRNA: 3'- gaCUGCG-UAUCGAGA-GGCGauCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 41389 | 0.7 | 0.663456 |
Target: 5'- -gGACGUGUccgcGGC-CUCCGCUuucuuccuaggcAGGCCGg -3' miRNA: 3'- gaCUGCGUA----UCGaGAGGCGA------------UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 41427 | 0.66 | 0.886826 |
Target: 5'- -nGGCGCcgGGCUC-CUGCgggcgacGGCCa -3' miRNA: 3'- gaCUGCGuaUCGAGaGGCGau-----CCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 42071 | 0.66 | 0.906323 |
Target: 5'- -cGGCGCGUGGCg-UCaGCUGcGCCGg -3' miRNA: 3'- gaCUGCGUAUCGagAGgCGAUcCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 44755 | 0.74 | 0.455669 |
Target: 5'- --aACGUAguuGCUCUCCGCgUAGGCCu -3' miRNA: 3'- gacUGCGUau-CGAGAGGCG-AUCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 47678 | 0.67 | 0.849928 |
Target: 5'- -aGACGCGuUGGCggUUUCCGCUuuuGcGCCGu -3' miRNA: 3'- gaCUGCGU-AUCG--AGAGGCGAu--C-CGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 58636 | 0.69 | 0.771817 |
Target: 5'- -cGACGCGU-GCUCUgCgGCgAGGUCGa -3' miRNA: 3'- gaCUGCGUAuCGAGA-GgCGaUCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 61492 | 0.66 | 0.886826 |
Target: 5'- -cGACGCGccccGCggUCUCgGCUAGcGCCGc -3' miRNA: 3'- gaCUGCGUau--CG--AGAGgCGAUC-CGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 64295 | 0.67 | 0.841936 |
Target: 5'- aCUGuuCGCGUccauGC-CUCCGCagAGGCCa -3' miRNA: 3'- -GACu-GCGUAu---CGaGAGGCGa-UCCGGc -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 67686 | 0.69 | 0.723693 |
Target: 5'- -aGGgGCAgaaUAGCUCUgCGCccGGGCCGu -3' miRNA: 3'- gaCUgCGU---AUCGAGAgGCGa-UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 79646 | 0.67 | 0.865318 |
Target: 5'- --aGCGCAUAGUUCgcgCCGCgccuGCCGc -3' miRNA: 3'- gacUGCGUAUCGAGa--GGCGauc-CGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 80115 | 0.73 | 0.493165 |
Target: 5'- gUGGCGC-UAGCggUCCGCaagGGGCCGc -3' miRNA: 3'- gACUGCGuAUCGagAGGCGa--UCCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 80993 | 0.66 | 0.872703 |
Target: 5'- -cGACGCcgacGUGGC-CUCCGCcuugguGGUCGa -3' miRNA: 3'- gaCUGCG----UAUCGaGAGGCGau----CCGGC- -5' |
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24351 | 3' | -56.5 | NC_005264.1 | + | 81057 | 0.68 | 0.820286 |
Target: 5'- aCUGGCGCGUGGUUUaucgacggcaaccggUCUGCcgagAGcGCCGg -3' miRNA: 3'- -GACUGCGUAUCGAG---------------AGGCGa---UC-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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