Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24353 | 3' | -55.7 | NC_005264.1 | + | 158842 | 0.68 | 0.824003 |
Target: 5'- gGUGGGCGaggaGGCAUGUGccgcccuGCUUGGCgGu -3' miRNA: 3'- -CGCUCGUg---CCGUAUAC-------CGAACCGgUu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 153089 | 0.67 | 0.865645 |
Target: 5'- uGgGAGCACGGC----GGCUUGccugccGCCGAg -3' miRNA: 3'- -CgCUCGUGCCGuauaCCGAAC------CGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 141764 | 1.07 | 0.003233 |
Target: 5'- gGCGAGCACGGCAUAUGGCUUGGCCAAc -3' miRNA: 3'- -CGCUCGUGCCGUAUACCGAACCGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 135150 | 0.7 | 0.690223 |
Target: 5'- aGCGAGCGuCGGCGa--GGCagaGGCCAGc -3' miRNA: 3'- -CGCUCGU-GCCGUauaCCGaa-CCGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 131982 | 0.67 | 0.841778 |
Target: 5'- cGCGA-CGacaGGCcgGUGGCggugGGCCGAc -3' miRNA: 3'- -CGCUcGUg--CCGuaUACCGaa--CCGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 126305 | 0.67 | 0.857899 |
Target: 5'- uCGGGCgcGCGGCcgAUGGCUccUGcGCCc- -3' miRNA: 3'- cGCUCG--UGCCGuaUACCGA--AC-CGGuu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 121915 | 0.66 | 0.907364 |
Target: 5'- gGCGcGGCGCGGCGgggagGGCgacGGCgAGa -3' miRNA: 3'- -CGC-UCGUGCCGUaua--CCGaa-CCGgUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 116650 | 0.67 | 0.865645 |
Target: 5'- cGCGAGCGaGGUuguagAUGGCggggcGGCCGc -3' miRNA: 3'- -CGCUCGUgCCGua---UACCGaa---CCGGUu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 109909 | 0.69 | 0.773878 |
Target: 5'- cGCGGGCGCGGCcAUgcaaugccccucgaaGUGGCgguucGCCGAc -3' miRNA: 3'- -CGCUCGUGCCG-UA---------------UACCGaac--CGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 107713 | 0.67 | 0.858683 |
Target: 5'- -aGcGCACGGCGgggugucgaacccucGUGGCUUGGgCAAg -3' miRNA: 3'- cgCuCGUGCCGUa--------------UACCGAACCgGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 106876 | 0.66 | 0.901001 |
Target: 5'- gGCGGGCACGaacGCAgc-GGCUUaaGCCGAg -3' miRNA: 3'- -CGCUCGUGC---CGUauaCCGAAc-CGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 103719 | 0.7 | 0.679918 |
Target: 5'- aGCGgcGGCGCGGCAUcagcGGCggcGGCCGc -3' miRNA: 3'- -CGC--UCGUGCCGUAua--CCGaa-CCGGUu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 102296 | 0.67 | 0.841778 |
Target: 5'- aCGGGCACaGGCGUgccagagcgcaAUGGCUgcGCCGAu -3' miRNA: 3'- cGCUCGUG-CCGUA-----------UACCGAacCGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 98430 | 0.67 | 0.849941 |
Target: 5'- cCGuGCccGCGGCGUcgGcCUUGGCCGGg -3' miRNA: 3'- cGCuCG--UGCCGUAuaCcGAACCGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 98153 | 0.68 | 0.814369 |
Target: 5'- gGCGAGCACGGCcugcccgccGGCa-GGCCc- -3' miRNA: 3'- -CGCUCGUGCCGuaua-----CCGaaCCGGuu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 97791 | 0.66 | 0.880478 |
Target: 5'- gGCG-GCGCGGCGUAaugaguaGGCU--GCCGAa -3' miRNA: 3'- -CGCuCGUGCCGUAUa------CCGAacCGGUU- -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 94600 | 0.71 | 0.62796 |
Target: 5'- cGCG-GCGCgGGCA--UGGCUUGGCgGu -3' miRNA: 3'- -CGCuCGUG-CCGUauACCGAACCGgUu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 93011 | 0.66 | 0.887554 |
Target: 5'- aGCGGGgGCagucaaGGCA-GUGGCUagUGGCCu- -3' miRNA: 3'- -CGCUCgUG------CCGUaUACCGA--ACCGGuu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 91556 | 0.66 | 0.894396 |
Target: 5'- uCGGGCGCGGCGgggGGCacgaGGCUu- -3' miRNA: 3'- cGCUCGUGCCGUauaCCGaa--CCGGuu -5' |
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24353 | 3' | -55.7 | NC_005264.1 | + | 88116 | 0.69 | 0.760424 |
Target: 5'- gGCcGGCGCGGUugcGUAcgGGCUgaUGGCCGGu -3' miRNA: 3'- -CGcUCGUGCCG---UAUa-CCGA--ACCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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