miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24353 3' -55.7 NC_005264.1 + 84321 0.77 0.344747
Target:  5'- cCGGGCACGGCGcgAUGGUUacUGGCCu- -3'
miRNA:   3'- cGCUCGUGCCGUa-UACCGA--ACCGGuu -5'
24353 3' -55.7 NC_005264.1 + 121915 0.66 0.907364
Target:  5'- gGCGcGGCGCGGCGgggagGGCgacGGCgAGa -3'
miRNA:   3'- -CGC-UCGUGCCGUaua--CCGaa-CCGgUU- -5'
24353 3' -55.7 NC_005264.1 + 106876 0.66 0.901001
Target:  5'- gGCGGGCACGaacGCAgc-GGCUUaaGCCGAg -3'
miRNA:   3'- -CGCUCGUGC---CGUauaCCGAAc-CGGUU- -5'
24353 3' -55.7 NC_005264.1 + 93011 0.66 0.887554
Target:  5'- aGCGGGgGCagucaaGGCA-GUGGCUagUGGCCu- -3'
miRNA:   3'- -CGCUCgUG------CCGUaUACCGA--ACCGGuu -5'
24353 3' -55.7 NC_005264.1 + 102296 0.67 0.841778
Target:  5'- aCGGGCACaGGCGUgccagagcgcaAUGGCUgcGCCGAu -3'
miRNA:   3'- cGCUCGUG-CCGUA-----------UACCGAacCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 26951 0.67 0.833418
Target:  5'- cGCGuGCGCaucGCA-GUGGCUUGGCg-- -3'
miRNA:   3'- -CGCuCGUGc--CGUaUACCGAACCGguu -5'
24353 3' -55.7 NC_005264.1 + 47207 0.67 0.833418
Target:  5'- aGCGGGgcCACGGCcgucgAUGGCU-GGUCGGa -3'
miRNA:   3'- -CGCUC--GUGCCGua---UACCGAaCCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 158842 0.68 0.824003
Target:  5'- gGUGGGCGaggaGGCAUGUGccgcccuGCUUGGCgGu -3'
miRNA:   3'- -CGCUCGUg---CCGUAUAC-------CGAACCGgUu -5'
24353 3' -55.7 NC_005264.1 + 38610 0.68 0.807232
Target:  5'- cCGAGCGCGGCGaagGGgUUaGCCAGg -3'
miRNA:   3'- cGCUCGUGCCGUauaCCgAAcCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 59994 0.68 0.798163
Target:  5'- cGCGAGCgagACGGCcgcGUGGCcgcGGCCc- -3'
miRNA:   3'- -CGCUCG---UGCCGua-UACCGaa-CCGGuu -5'
24353 3' -55.7 NC_005264.1 + 45230 0.73 0.525204
Target:  5'- cCGAGCGCaGCGUA-GGCaUGGCCGc -3'
miRNA:   3'- cGCUCGUGcCGUAUaCCGaACCGGUu -5'
24353 3' -55.7 NC_005264.1 + 135150 0.7 0.690223
Target:  5'- aGCGAGCGuCGGCGa--GGCagaGGCCAGc -3'
miRNA:   3'- -CGCUCGU-GCCGUauaCCGaa-CCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 30119 0.7 0.690223
Target:  5'- gGCG-GCGCGGCAccgagcUGcGGCgcaUUGGCCGAg -3'
miRNA:   3'- -CGCuCGUGCCGU------AUaCCG---AACCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 4270 0.7 0.700479
Target:  5'- aGCGAGUcuguuCGGCcugcAUGGCU-GGCCAGu -3'
miRNA:   3'- -CGCUCGu----GCCGua--UACCGAaCCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 88116 0.69 0.760424
Target:  5'- gGCcGGCGCGGUugcGUAcgGGCUgaUGGCCGGu -3'
miRNA:   3'- -CGcUCGUGCCG---UAUa-CCGA--ACCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 15483 0.69 0.760424
Target:  5'- gGCGAuCGCGGCGggcaugGGCcUGGCCu- -3'
miRNA:   3'- -CGCUcGUGCCGUaua---CCGaACCGGuu -5'
24353 3' -55.7 NC_005264.1 + 141764 1.07 0.003233
Target:  5'- gGCGAGCACGGCAUAUGGCUUGGCCAAc -3'
miRNA:   3'- -CGCUCGUGCCGUAUACCGAACCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 91556 0.66 0.894396
Target:  5'- uCGGGCGCGGCGgggGGCacgaGGCUu- -3'
miRNA:   3'- cGCUCGUGCCGUauaCCGaa--CCGGuu -5'
24353 3' -55.7 NC_005264.1 + 74449 0.66 0.894396
Target:  5'- uUGAGCuucGCgGGCAUGcGGCU-GGCCGu -3'
miRNA:   3'- cGCUCG---UG-CCGUAUaCCGAaCCGGUu -5'
24353 3' -55.7 NC_005264.1 + 21967 0.66 0.887554
Target:  5'- aGUGGuCGCGGCAU-UGGUagGGCCGc -3'
miRNA:   3'- -CGCUcGUGCCGUAuACCGaaCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.