miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24353 3' -55.7 NC_005264.1 + 83190 0.66 0.873173
Target:  5'- aGCGgcaGGCGCGGCGcgaacUAUGcGCUUuuaugGGCCGu -3'
miRNA:   3'- -CGC---UCGUGCCGU-----AUAC-CGAA-----CCGGUu -5'
24353 3' -55.7 NC_005264.1 + 109909 0.69 0.773878
Target:  5'- cGCGGGCGCGGCcAUgcaaugccccucgaaGUGGCgguucGCCGAc -3'
miRNA:   3'- -CGCUCGUGCCG-UA---------------UACCGaac--CGGUU- -5'
24353 3' -55.7 NC_005264.1 + 94600 0.71 0.62796
Target:  5'- cGCG-GCGCgGGCA--UGGCUUGGCgGu -3'
miRNA:   3'- -CGCuCGUG-CCGUauACCGAACCGgUu -5'
24353 3' -55.7 NC_005264.1 + 141764 1.07 0.003233
Target:  5'- gGCGAGCACGGCAUAUGGCUUGGCCAAc -3'
miRNA:   3'- -CGCUCGUGCCGUAUACCGAACCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 107713 0.67 0.858683
Target:  5'- -aGcGCACGGCGgggugucgaacccucGUGGCUUGGgCAAg -3'
miRNA:   3'- cgCuCGUGCCGUa--------------UACCGAACCgGUU- -5'
24353 3' -55.7 NC_005264.1 + 2889 0.66 0.907364
Target:  5'- gGCGcGGCGCGGCGgggagGGCgacGGCgAGa -3'
miRNA:   3'- -CGC-UCGUGCCGUaua--CCGaa-CCGgUU- -5'
24353 3' -55.7 NC_005264.1 + 91556 0.66 0.894396
Target:  5'- uCGGGCGCGGCGgggGGCacgaGGCUu- -3'
miRNA:   3'- cGCUCGUGCCGUauaCCGaa--CCGGuu -5'
24353 3' -55.7 NC_005264.1 + 74449 0.66 0.894396
Target:  5'- uUGAGCuucGCgGGCAUGcGGCU-GGCCGu -3'
miRNA:   3'- cGCUCG---UG-CCGUAUaCCGAaCCGGUu -5'
24353 3' -55.7 NC_005264.1 + 21967 0.66 0.887554
Target:  5'- aGUGGuCGCGGCAU-UGGUagGGCCGc -3'
miRNA:   3'- -CGCUcGUGCCGUAuACCGaaCCGGUu -5'
24353 3' -55.7 NC_005264.1 + 26163 0.68 0.779567
Target:  5'- gGCGAGgacuuuCGCGGCAcUGUcGGCggGGCCGu -3'
miRNA:   3'- -CGCUC------GUGCCGU-AUA-CCGaaCCGGUu -5'
24353 3' -55.7 NC_005264.1 + 131982 0.67 0.841778
Target:  5'- cGCGA-CGacaGGCcgGUGGCggugGGCCGAc -3'
miRNA:   3'- -CGCUcGUg--CCGuaUACCGaa--CCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 98430 0.67 0.849941
Target:  5'- cCGuGCccGCGGCGUcgGcCUUGGCCGGg -3'
miRNA:   3'- cGCuCG--UGCCGUAuaCcGAACCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 59557 0.66 0.873173
Target:  5'- aGC-AGCACGGCGUcggGGCUUaGGaCCu- -3'
miRNA:   3'- -CGcUCGUGCCGUAua-CCGAA-CC-GGuu -5'
24353 3' -55.7 NC_005264.1 + 39816 0.68 0.824003
Target:  5'- gGUGGGCGaggaGGCAUGUGccgcccuGCUUGGCgGu -3'
miRNA:   3'- -CGCUCGUg---CCGUAUAC-------CGAACCGgUu -5'
24353 3' -55.7 NC_005264.1 + 116650 0.67 0.865645
Target:  5'- cGCGAGCGaGGUuguagAUGGCggggcGGCCGc -3'
miRNA:   3'- -CGCUCGUgCCGua---UACCGaa---CCGGUu -5'
24353 3' -55.7 NC_005264.1 + 48375 0.67 0.855533
Target:  5'- -gGGGCGCagccgguagacuggGGCGUcgGGCggcGGCCAGg -3'
miRNA:   3'- cgCUCGUG--------------CCGUAuaCCGaa-CCGGUU- -5'
24353 3' -55.7 NC_005264.1 + 98153 0.68 0.814369
Target:  5'- gGCGAGCACGGCcugcccgccGGCa-GGCCc- -3'
miRNA:   3'- -CGCUCGUGCCGuaua-----CCGaaCCGGuu -5'
24353 3' -55.7 NC_005264.1 + 103719 0.7 0.679918
Target:  5'- aGCGgcGGCGCGGCAUcagcGGCggcGGCCGc -3'
miRNA:   3'- -CGC--UCGUGCCGUAua--CCGaa-CCGGUu -5'
24353 3' -55.7 NC_005264.1 + 153089 0.67 0.865645
Target:  5'- uGgGAGCACGGC----GGCUUGccugccGCCGAg -3'
miRNA:   3'- -CgCUCGUGCCGuauaCCGAAC------CGGUU- -5'
24353 3' -55.7 NC_005264.1 + 126305 0.67 0.857899
Target:  5'- uCGGGCgcGCGGCcgAUGGCUccUGcGCCc- -3'
miRNA:   3'- cGCUCG--UGCCGuaUACCGA--AC-CGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.