miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 3' -58.7 NC_005264.1 + 5044 0.68 0.734293
Target:  5'- cCGC-GUCGuGGGCGCCGCCu------ -3'
miRNA:   3'- aGCGcCAGC-CCCGUGGCGGcauaacu -5'
24354 3' -58.7 NC_005264.1 + 6260 0.7 0.616592
Target:  5'- gUCGCGGUCGu--CGCCGCCGUcggGAg -3'
miRNA:   3'- -AGCGCCAGCcccGUGGCGGCAuaaCU- -5'
24354 3' -58.7 NC_005264.1 + 7396 0.7 0.586909
Target:  5'- aUCGCGGcCccGGCGCCGUCGUccAUUGGu -3'
miRNA:   3'- -AGCGCCaGccCCGUGGCGGCA--UAACU- -5'
24354 3' -58.7 NC_005264.1 + 18636 0.69 0.646374
Target:  5'- aCGUGGU-GGGGUGCCGCCcaccGUAUgcuaaUGAg -3'
miRNA:   3'- aGCGCCAgCCCCGUGGCGG----CAUA-----ACU- -5'
24354 3' -58.7 NC_005264.1 + 24183 0.68 0.734293
Target:  5'- cCGCGGUCGGuaaagucuGGCGCggUGCCGg--UGGc -3'
miRNA:   3'- aGCGCCAGCC--------CCGUG--GCGGCauaACU- -5'
24354 3' -58.7 NC_005264.1 + 26197 0.67 0.771557
Target:  5'- aCGCGcGUCGaGGCuCCGCCGg---GAa -3'
miRNA:   3'- aGCGC-CAGCcCCGuGGCGGCauaaCU- -5'
24354 3' -58.7 NC_005264.1 + 31873 0.68 0.734293
Target:  5'- cUCGCGGUCGGcGCA-CGCCuUGUcGAu -3'
miRNA:   3'- -AGCGCCAGCCcCGUgGCGGcAUAaCU- -5'
24354 3' -58.7 NC_005264.1 + 32922 0.68 0.742813
Target:  5'- gCGCaGGggucgCGGGGCGCCGCgugagucUGUAUguuUGAu -3'
miRNA:   3'- aGCG-CCa----GCCCCGUGGCG-------GCAUA---ACU- -5'
24354 3' -58.7 NC_005264.1 + 35782 0.69 0.646374
Target:  5'- -gGCGGagggcgCGGuGGCGCCGUCGUGgcGGg -3'
miRNA:   3'- agCGCCa-----GCC-CCGUGGCGGCAUaaCU- -5'
24354 3' -58.7 NC_005264.1 + 37980 0.66 0.847786
Target:  5'- cCGCGGccaggcgagUGGcGGcCACCGCCGccggacUAUUGAa -3'
miRNA:   3'- aGCGCCa--------GCC-CC-GUGGCGGC------AUAACU- -5'
24354 3' -58.7 NC_005264.1 + 41149 0.68 0.705438
Target:  5'- cUCGCGGUCGGGGCcagaggACU-CUGUAgacGAg -3'
miRNA:   3'- -AGCGCCAGCCCCG------UGGcGGCAUaa-CU- -5'
24354 3' -58.7 NC_005264.1 + 42255 0.68 0.743755
Target:  5'- gUC-CGGcCGGGGC-CCGCC-UAUUGc -3'
miRNA:   3'- -AGcGCCaGCCCCGuGGCGGcAUAACu -5'
24354 3' -58.7 NC_005264.1 + 44560 0.67 0.762396
Target:  5'- -gGUGGUCGGguuGGCgACCGCCGg----- -3'
miRNA:   3'- agCGCCAGCC---CCG-UGGCGGCauaacu -5'
24354 3' -58.7 NC_005264.1 + 47016 0.66 0.839961
Target:  5'- gCGCGGUCaguccuGGGGCGagcgaCGuuGcAUUGAu -3'
miRNA:   3'- aGCGCCAG------CCCCGUg----GCggCaUAACU- -5'
24354 3' -58.7 NC_005264.1 + 47406 0.78 0.225408
Target:  5'- gCGUGGUUGGGuGCGCCGcCCGUAaugUGAu -3'
miRNA:   3'- aGCGCCAGCCC-CGUGGC-GGCAUa--ACU- -5'
24354 3' -58.7 NC_005264.1 + 60898 0.68 0.743755
Target:  5'- cCGCGGU-GGGGCcgacGCCGCCa------ -3'
miRNA:   3'- aGCGCCAgCCCCG----UGGCGGcauaacu -5'
24354 3' -58.7 NC_005264.1 + 61501 0.67 0.762396
Target:  5'- cCGCGGucUCGGcuaGCGCCGCgCGUAUa-- -3'
miRNA:   3'- aGCGCC--AGCCc--CGUGGCG-GCAUAacu -5'
24354 3' -58.7 NC_005264.1 + 69596 0.66 0.847786
Target:  5'- aCGCGccgaCGaGGGCGCCGcCCGgcgUGAg -3'
miRNA:   3'- aGCGCca--GC-CCCGUGGC-GGCauaACU- -5'
24354 3' -58.7 NC_005264.1 + 70662 0.69 0.685896
Target:  5'- cCGUGGcCGcGGCGCCGCCGg----- -3'
miRNA:   3'- aGCGCCaGCcCCGUGGCGGCauaacu -5'
24354 3' -58.7 NC_005264.1 + 72468 0.67 0.78952
Target:  5'- cCGcCGGUCGGaucguguaccGGCAgCGUCGgcggGUUGAa -3'
miRNA:   3'- aGC-GCCAGCC----------CCGUgGCGGCa---UAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.