Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24354 | 3' | -58.7 | NC_005264.1 | + | 107220 | 0.67 | 0.78952 |
Target: 5'- gCGCGGUUGGcauucGGCGCCaGCCGc----- -3' miRNA: 3'- aGCGCCAGCC-----CCGUGG-CGGCauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 24183 | 0.68 | 0.734293 |
Target: 5'- cCGCGGUCGGuaaagucuGGCGCggUGCCGg--UGGc -3' miRNA: 3'- aGCGCCAGCC--------CCGUG--GCGGCauaACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 31873 | 0.68 | 0.734293 |
Target: 5'- cUCGCGGUCGGcGCA-CGCCuUGUcGAu -3' miRNA: 3'- -AGCGCCAGCCcCGUgGCGGcAUAaCU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 32922 | 0.68 | 0.742813 |
Target: 5'- gCGCaGGggucgCGGGGCGCCGCgugagucUGUAUguuUGAu -3' miRNA: 3'- aGCG-CCa----GCCCCGUGGCG-------GCAUA---ACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 60898 | 0.68 | 0.743755 |
Target: 5'- cCGCGGU-GGGGCcgacGCCGCCa------ -3' miRNA: 3'- aGCGCCAgCCCCG----UGGCGGcauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 161282 | 0.68 | 0.743755 |
Target: 5'- gUC-CGGcCGGGGC-CCGCC-UAUUGc -3' miRNA: 3'- -AGcGCCaGCCCCGuGGCGGcAUAACu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 44560 | 0.67 | 0.762396 |
Target: 5'- -gGUGGUCGGguuGGCgACCGCCGg----- -3' miRNA: 3'- agCGCCAGCC---CCG-UGGCGGCauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 61501 | 0.67 | 0.762396 |
Target: 5'- cCGCGGucUCGGcuaGCGCCGCgCGUAUa-- -3' miRNA: 3'- aGCGCC--AGCCc--CGUGGCG-GCAUAacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 26197 | 0.67 | 0.771557 |
Target: 5'- aCGCGcGUCGaGGCuCCGCCGg---GAa -3' miRNA: 3'- aGCGC-CAGCcCCGuGGCGGCauaaCU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 5044 | 0.68 | 0.734293 |
Target: 5'- cCGC-GUCGuGGGCGCCGCCu------ -3' miRNA: 3'- aGCGcCAGC-CCCGUGGCGGcauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 160176 | 0.68 | 0.705438 |
Target: 5'- cUCGCGGUCGGGGCcagaggACU-CUGUAgacGAg -3' miRNA: 3'- -AGCGCCAGCCCCG------UGGcGGCAUaa-CU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 117430 | 0.68 | 0.695692 |
Target: 5'- gUCGCGGcgCGcaGGGCGCCGCCc------ -3' miRNA: 3'- -AGCGCCa-GC--CCCGUGGCGGcauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 7396 | 0.7 | 0.586909 |
Target: 5'- aUCGCGGcCccGGCGCCGUCGUccAUUGGu -3' miRNA: 3'- -AGCGCCaGccCCGUGGCGGCA--UAACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 125287 | 0.7 | 0.616592 |
Target: 5'- gUCGCGGUCGu--CGCCGCCGUcggGAg -3' miRNA: 3'- -AGCGCCAGCcccGUGGCGGCAuaaCU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 116478 | 0.7 | 0.636447 |
Target: 5'- aUCGCGGuaUCGGGGaUACCGCgGguccUGGa -3' miRNA: 3'- -AGCGCC--AGCCCC-GUGGCGgCaua-ACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 18636 | 0.69 | 0.646374 |
Target: 5'- aCGUGGU-GGGGUGCCGCCcaccGUAUgcuaaUGAg -3' miRNA: 3'- aGCGCCAgCCCCGUGGCGG----CAUA-----ACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 154808 | 0.69 | 0.646374 |
Target: 5'- -gGCGGagggcgCGGuGGCGCCGUCGUGgcGGg -3' miRNA: 3'- agCGCCa-----GCC-CCGUGGCGGCAUaaCU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 116228 | 0.69 | 0.675073 |
Target: 5'- aCGCGGUcccacgacggugcCGGGaGCuCCGCCGUGa--- -3' miRNA: 3'- aGCGCCA-------------GCCC-CGuGGCGGCAUaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 70662 | 0.69 | 0.685896 |
Target: 5'- cCGUGGcCGcGGCGCCGCCGg----- -3' miRNA: 3'- aGCGCCaGCcCCGUGGCGGCauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 73466 | 0.68 | 0.695692 |
Target: 5'- gCGCGGaCaGGGCGCCGUU-UGUUGAc -3' miRNA: 3'- aGCGCCaGcCCCGUGGCGGcAUAACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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