Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24354 | 3' | -58.7 | NC_005264.1 | + | 37980 | 0.66 | 0.847786 |
Target: 5'- cCGCGGccaggcgagUGGcGGcCACCGCCGccggacUAUUGAa -3' miRNA: 3'- aGCGCCa--------GCC-CC-GUGGCGGC------AUAACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 97669 | 0.69 | 0.644389 |
Target: 5'- cCGCGGccauggccagaGaGGGCGCCGCCGcggUGUUGGu -3' miRNA: 3'- aGCGCCag---------C-CCCGUGGCGGC---AUAACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 96318 | 0.68 | 0.705438 |
Target: 5'- aCGCGGUCGucgucaGGGCACgcuCGCUGUAc--- -3' miRNA: 3'- aGCGCCAGC------CCCGUG---GCGGCAUaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 124170 | 0.68 | 0.724747 |
Target: 5'- aCGUGGUgauGGGCGCCGCCGc----- -3' miRNA: 3'- aGCGCCAgc-CCCGUGGCGGCauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 122588 | 0.67 | 0.762396 |
Target: 5'- cCGC-GUUGGGGUACCGCaCGUc---- -3' miRNA: 3'- aGCGcCAGCCCCGUGGCG-GCAuaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 72468 | 0.67 | 0.78952 |
Target: 5'- cCGcCGGUCGGaucguguaccGGCAgCGUCGgcggGUUGAa -3' miRNA: 3'- aGC-GCCAGCC----------CCGUgGCGGCa---UAACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 89021 | 0.76 | 0.304263 |
Target: 5'- cUCGCGcauGUCGGGGCACuCGCCuGUGUa-- -3' miRNA: 3'- -AGCGC---CAGCCCCGUG-GCGG-CAUAacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 35782 | 0.69 | 0.646374 |
Target: 5'- -gGCGGagggcgCGGuGGCGCCGUCGUGgcGGg -3' miRNA: 3'- agCGCCa-----GCC-CCGUGGCGGCAUaaCU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 42255 | 0.68 | 0.743755 |
Target: 5'- gUC-CGGcCGGGGC-CCGCC-UAUUGc -3' miRNA: 3'- -AGcGCCaGCCCCGuGGCGGcAUAACu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 80123 | 0.67 | 0.798306 |
Target: 5'- -aGCGGUCcgcaaGGGGcCGCUGUCGUGgcUGGg -3' miRNA: 3'- agCGCCAG-----CCCC-GUGGCGGCAUa-ACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 92684 | 0.66 | 0.83678 |
Target: 5'- aUUGCGGUagUGaGGCGCCGCCGcggcagcaagcacGUUGAg -3' miRNA: 3'- -AGCGCCA--GCcCCGUGGCGGCa------------UAACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 141624 | 1.09 | 0.001876 |
Target: 5'- aUCGCGGUCGGGGCACCGCCGUAUUGAg -3' miRNA: 3'- -AGCGCCAGCCCCGUGGCGGCAUAACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 162081 | 0.66 | 0.823783 |
Target: 5'- gUCGCGua-GGGGCuCCGCCGa----- -3' miRNA: 3'- -AGCGCcagCCCCGuGGCGGCauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 41149 | 0.68 | 0.705438 |
Target: 5'- cUCGCGGUCGGGGCcagaggACU-CUGUAgacGAg -3' miRNA: 3'- -AGCGCCAGCCCCG------UGGcGGCAUaa-CU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 6260 | 0.7 | 0.616592 |
Target: 5'- gUCGCGGUCGu--CGCCGCCGUcggGAg -3' miRNA: 3'- -AGCGCCAGCcccGUGGCGGCAuaaCU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 32922 | 0.68 | 0.742813 |
Target: 5'- gCGCaGGggucgCGGGGCGCCGCgugagucUGUAUguuUGAu -3' miRNA: 3'- aGCG-CCa----GCCCCGUGGCG-------GCAUA---ACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 31873 | 0.68 | 0.734293 |
Target: 5'- cUCGCGGUCGGcGCA-CGCCuUGUcGAu -3' miRNA: 3'- -AGCGCCAGCCcCGUgGCGGcAUAaCU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 24183 | 0.68 | 0.734293 |
Target: 5'- cCGCGGUCGGuaaagucuGGCGCggUGCCGg--UGGc -3' miRNA: 3'- aGCGCCAGCC--------CCGUG--GCGGCauaACU- -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 5044 | 0.68 | 0.734293 |
Target: 5'- cCGC-GUCGuGGGCGCCGCCu------ -3' miRNA: 3'- aGCGcCAGC-CCCGUGGCGGcauaacu -5' |
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24354 | 3' | -58.7 | NC_005264.1 | + | 116228 | 0.69 | 0.675073 |
Target: 5'- aCGCGGUcccacgacggugcCGGGaGCuCCGCCGUGa--- -3' miRNA: 3'- aGCGCCA-------------GCCC-CGuGGCGGCAUaacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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