miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 93502 0.73 0.864852
Target:  5'- cGGCCGGCGCGUc-GUucccuUCGGACCugAa -3'
miRNA:   3'- -CCGGUCGUGCAucCAu----AGUUUGGugU- -5'
24354 5' -50.6 NC_005264.1 + 94520 0.66 0.995867
Target:  5'- cGUCGGcCACGUGGGagggCAGcggcGCCGCAc -3'
miRNA:   3'- cCGGUC-GUGCAUCCaua-GUU----UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97111 0.66 0.995867
Target:  5'- cGGCCAGCGCGaguuGGccucugagcUCAAggGCUACAg -3'
miRNA:   3'- -CCGGUCGUGCau--CCau-------AGUU--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97213 0.66 0.99648
Target:  5'- cGGUgcGCGCGcGGGUAcccaCGAGCCGCGa -3'
miRNA:   3'- -CCGguCGUGCaUCCAUa---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97745 0.66 0.99517
Target:  5'- aGGCCGGCACGacccGGUGUUcguguuuGACCcucACGg -3'
miRNA:   3'- -CCGGUCGUGCau--CCAUAGu------UUGG---UGU- -5'
24354 5' -50.6 NC_005264.1 + 98476 0.7 0.95003
Target:  5'- cGGCCGGCACGcgcgAGGgcaucuccUCAGcGCUACAg -3'
miRNA:   3'- -CCGGUCGUGCa---UCCau------AGUU-UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 102317 0.71 0.924732
Target:  5'- cGGCCGGCauGCGUAGGUuacUCAcguuguacgaagcGGCCAa- -3'
miRNA:   3'- -CCGGUCG--UGCAUCCAu--AGU-------------UUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 102756 0.66 0.993488
Target:  5'- cGCCGGCA-GUAGGcUAggggCGGGCCAg- -3'
miRNA:   3'- cCGGUCGUgCAUCC-AUa---GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 107704 0.72 0.871017
Target:  5'- cGCCAGCACagcgcacggcgGGGUGUCGAACCc-- -3'
miRNA:   3'- cCGGUCGUGca---------UCCAUAGUUUGGugu -5'
24354 5' -50.6 NC_005264.1 + 108437 0.66 0.996423
Target:  5'- --gUAGCGCGUGGGgagAUUAGcggaguuGCCGCAu -3'
miRNA:   3'- ccgGUCGUGCAUCCa--UAGUU-------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 111726 0.71 0.93075
Target:  5'- cGCCAGCGuCG-AGGcgcgagCAGACCGCAg -3'
miRNA:   3'- cCGGUCGU-GCaUCCaua---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 117042 0.69 0.961879
Target:  5'- -aUCAGCGCGgcGGcc-CAGACCGCAa -3'
miRNA:   3'- ccGGUCGUGCauCCauaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 120199 0.68 0.981636
Target:  5'- uGCCGGCGCGcgauggGGGUAcgcagCGGACCGg- -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUa----GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 123612 0.66 0.99517
Target:  5'- cGGCCGGUAUu--GGUGuUCAAguauccggcaGCCGCAg -3'
miRNA:   3'- -CCGGUCGUGcauCCAU-AGUU----------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 124653 0.72 0.894175
Target:  5'- gGGCC-GCGCGacgcUAGGUGUCc--CCACAg -3'
miRNA:   3'- -CCGGuCGUGC----AUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 125634 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 126896 0.66 0.99648
Target:  5'- cGUCGGCGCGaaacAGGUcUCGcGCUACAu -3'
miRNA:   3'- cCGGUCGUGCa---UCCAuAGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 128119 0.67 0.991367
Target:  5'- uGCCAGCugGggccgaauaUGGGUcuUCGguGACCGCGa -3'
miRNA:   3'- cCGGUCGugC---------AUCCAu-AGU--UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 128856 0.66 0.995095
Target:  5'- gGGCCGccGCACGUucgcgagAGG-GUCAAGCgGCc -3'
miRNA:   3'- -CCGGU--CGUGCA-------UCCaUAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 132403 0.66 0.993488
Target:  5'- uGGCCgcaGGCACG-AGcUA-CAAGCCGCGg -3'
miRNA:   3'- -CCGG---UCGUGCaUCcAUaGUUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.