miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 34776 0.69 0.95817
Target:  5'- cGCUAgGCuCGUGGGUgaGUCuAGACCGCAu -3'
miRNA:   3'- cCGGU-CGuGCAUCCA--UAG-UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 34810 0.66 0.995867
Target:  5'- uGUCAuGCGCGUcgaguGGUAggaCGGGCCACGa -3'
miRNA:   3'- cCGGU-CGUGCAu----CCAUa--GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 49124 0.66 0.996423
Target:  5'- aGGCCaacgcuuggGGCACGUucaAGGUG-CAAGacaugccCCACAg -3'
miRNA:   3'- -CCGG---------UCGUGCA---UCCAUaGUUU-------GGUGU- -5'
24354 5' -50.6 NC_005264.1 + 54606 0.7 0.935951
Target:  5'- cGGCCucGGCGCGUGcGGgacAUC-GGCCACGu -3'
miRNA:   3'- -CCGG--UCGUGCAU-CCa--UAGuUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 59024 0.68 0.979428
Target:  5'- aGGCaGGCGCGUcAGGUcgGUCuccgcgcauccGAACCGCGa -3'
miRNA:   3'- -CCGgUCGUGCA-UCCA--UAG-----------UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 59839 0.73 0.864852
Target:  5'- cGCCAGCGCGcaauacguGGUG-CAGGCCGCc -3'
miRNA:   3'- cCGGUCGUGCau------CCAUaGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 61723 0.67 0.991367
Target:  5'- uGCCgaacaGGUAuuCGUAGGUGUC-GGCCACu -3'
miRNA:   3'- cCGG-----UCGU--GCAUCCAUAGuUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 67285 0.7 0.95003
Target:  5'- cGCUAGCGCGUcggcuucgaaGGGUAUCGcGGCgGCGc -3'
miRNA:   3'- cCGGUCGUGCA----------UCCAUAGU-UUGgUGU- -5'
24354 5' -50.6 NC_005264.1 + 67393 0.68 0.977027
Target:  5'- cGCCGGCGCgGUAGcGUAUU---CCACGa -3'
miRNA:   3'- cCGGUCGUG-CAUC-CAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 67464 0.66 0.99648
Target:  5'- cGGCCAGCuCGUgaaacccgAGGc--CGGGCCGCc -3'
miRNA:   3'- -CCGGUCGuGCA--------UCCauaGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 70100 0.68 0.979428
Target:  5'- uGUCGGCGCGgAGGaccuUAUCGAgcuGCCGCGu -3'
miRNA:   3'- cCGGUCGUGCaUCC----AUAGUU---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 73065 0.69 0.95817
Target:  5'- cGGCCAGagACGUGGcGUaGUCGGGCuCACu -3'
miRNA:   3'- -CCGGUCg-UGCAUC-CA-UAGUUUG-GUGu -5'
24354 5' -50.6 NC_005264.1 + 74643 0.71 0.93075
Target:  5'- cGUCAGCGCGaacccaGGGUG-CAGGCCGCu -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUaGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 75107 0.66 0.995867
Target:  5'- cGCCGGCGCcgagcUGGGgcgcaGUCAAaugGCCGCGc -3'
miRNA:   3'- cCGGUCGUGc----AUCCa----UAGUU---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 76008 0.71 0.919577
Target:  5'- cGGCgugAGCACGUuccAGGUAUCc-ACCGCGa -3'
miRNA:   3'- -CCGg--UCGUGCA---UCCAUAGuuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 77263 0.67 0.987202
Target:  5'- -cCCAGCACGU-GGUG-CAcgguGCCGCGc -3'
miRNA:   3'- ccGGUCGUGCAuCCAUaGUu---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 83224 0.78 0.622266
Target:  5'- gGGCCGuuGCGCGUGGGcGUCuAGGCCGCc -3'
miRNA:   3'- -CCGGU--CGUGCAUCCaUAG-UUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 84179 0.66 0.99517
Target:  5'- cGCCGGCACauaGUGGGa--CGAGgCACAg -3'
miRNA:   3'- cCGGUCGUG---CAUCCauaGUUUgGUGU- -5'
24354 5' -50.6 NC_005264.1 + 86158 0.74 0.814281
Target:  5'- cGCCaAGCugGgcagAGGUAUCuucuGCCGCAc -3'
miRNA:   3'- cCGG-UCGugCa---UCCAUAGuu--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 88692 0.66 0.99438
Target:  5'- aGGCCgaAGCagcuGCGUGGcGUG-CAuGCCGCAu -3'
miRNA:   3'- -CCGG--UCG----UGCAUC-CAUaGUuUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.