miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 1172 0.68 0.981636
Target:  5'- uGCCGGCGCGcgauggGGGUAcgcagCGGACCGg- -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUa----GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 5626 0.72 0.894175
Target:  5'- gGGCC-GCGCGacgcUAGGUGUCc--CCACAg -3'
miRNA:   3'- -CCGGuCGUGC----AUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 6607 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 8546 0.66 0.994943
Target:  5'- gGGCCAGCAaaagccccaaaaucCagaucUAGGUAUCuccccguauGACCGCAg -3'
miRNA:   3'- -CCGGUCGU--------------Gc----AUCCAUAGu--------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 9092 0.67 0.991367
Target:  5'- uGCCAGCugGggccgaauaUGGGUcuUCGguGACCGCGa -3'
miRNA:   3'- cCGGUCGugC---------AUCCAu-AGU--UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 9830 0.66 0.995095
Target:  5'- gGGCCGccGCACGUucgcgagAGG-GUCAAGCgGCc -3'
miRNA:   3'- -CCGGU--CGUGCA-------UCCaUAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 15926 0.69 0.971327
Target:  5'- aGGUguGCGCGUGaguuucgagcgucGGUuugcgCGAGCCACGa -3'
miRNA:   3'- -CCGguCGUGCAU-------------CCAua---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 16444 0.66 0.99648
Target:  5'- gGGCCuGCcCGcGGGUgugaacgugGUCGAACCAg- -3'
miRNA:   3'- -CCGGuCGuGCaUCCA---------UAGUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 18903 0.66 0.99438
Target:  5'- cGGCUugGGCugGUAGG---CAAGCCGg- -3'
miRNA:   3'- -CCGG--UCGugCAUCCauaGUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 20575 0.73 0.864852
Target:  5'- uGCCAGCGCGcGGGUGUU---CCAUAg -3'
miRNA:   3'- cCGGUCGUGCaUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 21060 0.7 0.935951
Target:  5'- cGGCCuuAGCGCGUuGGc--CAAGCCAUAu -3'
miRNA:   3'- -CCGG--UCGUGCAuCCauaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 21196 0.66 0.99546
Target:  5'- uGGCCGGCcguaguagacucaauACGgcGGUGccCcGACCGCGa -3'
miRNA:   3'- -CCGGUCG---------------UGCauCCAUa-GuUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 22006 0.74 0.823204
Target:  5'- aGGCgCGGCGCGUAGGUuUUuuGCCcGCGa -3'
miRNA:   3'- -CCG-GUCGUGCAUCCAuAGuuUGG-UGU- -5'
24354 5' -50.6 NC_005264.1 + 25610 0.68 0.983468
Target:  5'- gGGCCGGCguugcggaacacgGCGgcGGUG--GGGCCGCGc -3'
miRNA:   3'- -CCGGUCG-------------UGCauCCAUagUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 27896 0.67 0.990119
Target:  5'- uGGCCAGCgucucgGCGaGGGUGagCGacgacGACCGCGg -3'
miRNA:   3'- -CCGGUCG------UGCaUCCAUa-GU-----UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 28867 0.66 0.99438
Target:  5'- cGGCCcGCGCGggcUAGGUuUCAugAACUGCu -3'
miRNA:   3'- -CCGGuCGUGC---AUCCAuAGU--UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 30237 0.72 0.894175
Target:  5'- cGGCCAGCGCGgcaaagcGGUGcCAcGCUGCAc -3'
miRNA:   3'- -CCGGUCGUGCau-----CCAUaGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 30638 0.74 0.811569
Target:  5'- cGCgCAGCGCGUAGGUcgucGUCGucgucgucgucgucGACCACu -3'
miRNA:   3'- cCG-GUCGUGCAUCCA----UAGU--------------UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 32694 0.72 0.894175
Target:  5'- cGGCCAGgcuuuuaGCGggggugAGGUGUCAuAACCGCu -3'
miRNA:   3'- -CCGGUCg------UGCa-----UCCAUAGU-UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 34130 0.66 0.993488
Target:  5'- uGCCucuggugacgGGCGCGUAGGcuucggGUCGugguACCGCGc -3'
miRNA:   3'- cCGG----------UCGUGCAUCCa-----UAGUu---UGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.