miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 141663 1.12 0.006625
Target:  5'- cGGCCAGCACGUAGGUAUCAAACCACAc -3'
miRNA:   3'- -CCGGUCGUGCAUCCAUAGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 83224 0.78 0.622266
Target:  5'- gGGCCGuuGCGCGUGGGcGUCuAGGCCGCc -3'
miRNA:   3'- -CCGGU--CGUGCAUCCaUAG-UUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 149665 0.74 0.804262
Target:  5'- cGCgCAGCGCGUAGGUcgucGUCGucgucgucgucgcGACCACu -3'
miRNA:   3'- cCG-GUCGUGCAUCCA----UAGU-------------UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 30638 0.74 0.811569
Target:  5'- cGCgCAGCGCGUAGGUcgucGUCGucgucgucgucgucGACCACu -3'
miRNA:   3'- cCG-GUCGUGCAUCCA----UAGU--------------UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 86158 0.74 0.814281
Target:  5'- cGCCaAGCugGgcagAGGUAUCuucuGCCGCAc -3'
miRNA:   3'- cCGG-UCGugCa---UCCAUAGuu--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 22006 0.74 0.823204
Target:  5'- aGGCgCGGCGCGUAGGUuUUuuGCCcGCGa -3'
miRNA:   3'- -CCG-GUCGUGCAUCCAuAGuuUGG-UGU- -5'
24354 5' -50.6 NC_005264.1 + 59839 0.73 0.864852
Target:  5'- cGCCAGCGCGcaauacguGGUG-CAGGCCGCc -3'
miRNA:   3'- cCGGUCGUGCau------CCAUaGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 20575 0.73 0.864852
Target:  5'- uGCCAGCGCGcGGGUGUU---CCAUAg -3'
miRNA:   3'- cCGGUCGUGCaUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 93502 0.73 0.864852
Target:  5'- cGGCCGGCGCGUc-GUucccuUCGGACCugAa -3'
miRNA:   3'- -CCGGUCGUGCAucCAu----AGUUUGGugU- -5'
24354 5' -50.6 NC_005264.1 + 107704 0.72 0.871017
Target:  5'- cGCCAGCACagcgcacggcgGGGUGUCGAACCc-- -3'
miRNA:   3'- cCGGUCGUGca---------UCCAUAGUUUGGugu -5'
24354 5' -50.6 NC_005264.1 + 32694 0.72 0.894175
Target:  5'- cGGCCAGgcuuuuaGCGggggugAGGUGUCAuAACCGCu -3'
miRNA:   3'- -CCGGUCg------UGCa-----UCCAUAGU-UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 30237 0.72 0.894175
Target:  5'- cGGCCAGCGCGgcaaagcGGUGcCAcGCUGCAc -3'
miRNA:   3'- -CCGGUCGUGCau-----CCAUaGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 124653 0.72 0.894175
Target:  5'- gGGCC-GCGCGacgcUAGGUGUCc--CCACAg -3'
miRNA:   3'- -CCGGuCGUGC----AUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 5626 0.72 0.894175
Target:  5'- gGGCC-GCGCGacgcUAGGUGUCc--CCACAg -3'
miRNA:   3'- -CCGGuCGUGC----AUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 125634 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 6607 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 76008 0.71 0.919577
Target:  5'- cGGCgugAGCACGUuccAGGUAUCc-ACCGCGa -3'
miRNA:   3'- -CCGg--UCGUGCA---UCCAUAGuuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 102317 0.71 0.924732
Target:  5'- cGGCCGGCauGCGUAGGUuacUCAcguuguacgaagcGGCCAa- -3'
miRNA:   3'- -CCGGUCG--UGCAUCCAu--AGU-------------UUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 137541 0.71 0.925292
Target:  5'- cGGCCucGGCgACGUGGuagGUCAcACCACAc -3'
miRNA:   3'- -CCGG--UCG-UGCAUCca-UAGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 111726 0.71 0.93075
Target:  5'- cGCCAGCGuCG-AGGcgcgagCAGACCGCAg -3'
miRNA:   3'- cCGGUCGU-GCaUCCaua---GUUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.