miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 61723 0.67 0.991367
Target:  5'- uGCCgaacaGGUAuuCGUAGGUGUC-GGCCACu -3'
miRNA:   3'- cCGG-----UCGU--GCAUCCAUAGuUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 98476 0.7 0.95003
Target:  5'- cGGCCGGCACGcgcgAGGgcaucuccUCAGcGCUACAg -3'
miRNA:   3'- -CCGGUCGUGCa---UCCau------AGUU-UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 138892 0.7 0.952991
Target:  5'- cGUCGGCGCGUGGGaccuucgaGUCAAacauuccaaguauuGCCACGg -3'
miRNA:   3'- cCGGUCGUGCAUCCa-------UAGUU--------------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 153802 0.69 0.95817
Target:  5'- cGCUAgGCuCGUGGGUgaGUCuAGACCGCAu -3'
miRNA:   3'- cCGGU-CGuGCAUCCA--UAG-UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 117042 0.69 0.961879
Target:  5'- -aUCAGCGCGgcGGcc-CAGACCGCAa -3'
miRNA:   3'- ccGGUCGUGCauCCauaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 146008 0.69 0.961879
Target:  5'- cGGCguGCGCGUuauGGgcUCGGGCgACu -3'
miRNA:   3'- -CCGguCGUGCAu--CCauAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 67393 0.68 0.977027
Target:  5'- cGCCGGCGCgGUAGcGUAUU---CCACGa -3'
miRNA:   3'- cCGGUCGUG-CAUC-CAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 120199 0.68 0.981636
Target:  5'- uGCCGGCGCGcgauggGGGUAcgcagCGGACCGg- -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUa----GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 27896 0.67 0.990119
Target:  5'- uGGCCAGCgucucgGCGaGGGUGagCGacgacGACCGCGg -3'
miRNA:   3'- -CCGGUCG------UGCaUCCAUa-GU-----UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 67285 0.7 0.95003
Target:  5'- cGCUAGCGCGUcggcuucgaaGGGUAUCGcGGCgGCGc -3'
miRNA:   3'- cCGGUCGUGCA----------UCCAUAGU-UUGgUGU- -5'
24354 5' -50.6 NC_005264.1 + 54606 0.7 0.935951
Target:  5'- cGGCCucGGCGCGUGcGGgacAUC-GGCCACGu -3'
miRNA:   3'- -CCGG--UCGUGCAU-CCa--UAGuUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 21060 0.7 0.935951
Target:  5'- cGGCCuuAGCGCGUuGGc--CAAGCCAUAu -3'
miRNA:   3'- -CCGG--UCGUGCAuCCauaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 22006 0.74 0.823204
Target:  5'- aGGCgCGGCGCGUAGGUuUUuuGCCcGCGa -3'
miRNA:   3'- -CCG-GUCGUGCAUCCAuAGuuUGG-UGU- -5'
24354 5' -50.6 NC_005264.1 + 93502 0.73 0.864852
Target:  5'- cGGCCGGCGCGUc-GUucccuUCGGACCugAa -3'
miRNA:   3'- -CCGGUCGUGCAucCAu----AGUUUGGugU- -5'
24354 5' -50.6 NC_005264.1 + 59839 0.73 0.864852
Target:  5'- cGCCAGCGCGcaauacguGGUG-CAGGCCGCc -3'
miRNA:   3'- cCGGUCGUGCau------CCAUaGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 30237 0.72 0.894175
Target:  5'- cGGCCAGCGCGgcaaagcGGUGcCAcGCUGCAc -3'
miRNA:   3'- -CCGGUCGUGCau-----CCAUaGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 32694 0.72 0.894175
Target:  5'- cGGCCAGgcuuuuaGCGggggugAGGUGUCAuAACCGCu -3'
miRNA:   3'- -CCGGUCg------UGCa-----UCCAUAGU-UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 124653 0.72 0.894175
Target:  5'- gGGCC-GCGCGacgcUAGGUGUCc--CCACAg -3'
miRNA:   3'- -CCGGuCGUGC----AUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 125634 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 76008 0.71 0.919577
Target:  5'- cGGCgugAGCACGUuccAGGUAUCc-ACCGCGa -3'
miRNA:   3'- -CCGg--UCGUGCA---UCCAUAGuuUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.