Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24354 | 5' | -50.6 | NC_005264.1 | + | 126896 | 0.66 | 0.99648 |
Target: 5'- cGUCGGCGCGaaacAGGUcUCGcGCUACAu -3' miRNA: 3'- cCGGUCGUGCa---UCCAuAGUuUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 70100 | 0.68 | 0.979428 |
Target: 5'- uGUCGGCGCGgAGGaccuUAUCGAgcuGCCGCGu -3' miRNA: 3'- cCGGUCGUGCaUCC----AUAGUU---UGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 139464 | 0.69 | 0.97162 |
Target: 5'- cGGCCAG-GCGUGucuGG-AUCGGACCAUc -3' miRNA: 3'- -CCGGUCgUGCAU---CCaUAGUUUGGUGu -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 141663 | 1.12 | 0.006625 |
Target: 5'- cGGCCAGCACGUAGGUAUCAAACCACAc -3' miRNA: 3'- -CCGGUCGUGCAUCCAUAGUUUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 154738 | 0.66 | 0.99517 |
Target: 5'- cGGCCGGUACcUGuGUAUCGcgUCGCGa -3' miRNA: 3'- -CCGGUCGUGcAUcCAUAGUuuGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 84179 | 0.66 | 0.99517 |
Target: 5'- cGCCGGCACauaGUGGGa--CGAGgCACAg -3' miRNA: 3'- cCGGUCGUG---CAUCCauaGUUUgGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 97745 | 0.66 | 0.99517 |
Target: 5'- aGGCCGGCACGacccGGUGUUcguguuuGACCcucACGg -3' miRNA: 3'- -CCGGUCGUGCau--CCAUAGu------UUGG---UGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 152147 | 0.66 | 0.99517 |
Target: 5'- aGGCCAGCACGga-GUA-CAucGACUugAa -3' miRNA: 3'- -CCGGUCGUGCaucCAUaGU--UUGGugU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 132403 | 0.66 | 0.993488 |
Target: 5'- uGGCCgcaGGCACG-AGcUA-CAAGCCGCGg -3' miRNA: 3'- -CCGG---UCGUGCaUCcAUaGUUUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 1172 | 0.68 | 0.981636 |
Target: 5'- uGCCGGCGCGcgauggGGGUAcgcagCGGACCGg- -3' miRNA: 3'- cCGGUCGUGCa-----UCCAUa----GUUUGGUgu -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 9092 | 0.67 | 0.991367 |
Target: 5'- uGCCAGCugGggccgaauaUGGGUcuUCGguGACCGCGa -3' miRNA: 3'- cCGGUCGugC---------AUCCAu-AGU--UUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 28867 | 0.66 | 0.99438 |
Target: 5'- cGGCCcGCGCGggcUAGGUuUCAugAACUGCu -3' miRNA: 3'- -CCGGuCGUGC---AUCCAuAGU--UUGGUGu -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 97213 | 0.66 | 0.99648 |
Target: 5'- cGGUgcGCGCGcGGGUAcccaCGAGCCGCGa -3' miRNA: 3'- -CCGguCGUGCaUCCAUa---GUUUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 77263 | 0.67 | 0.987202 |
Target: 5'- -cCCAGCACGU-GGUG-CAcgguGCCGCGc -3' miRNA: 3'- ccGGUCGUGCAuCCAUaGUu---UGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 94520 | 0.66 | 0.995867 |
Target: 5'- cGUCGGcCACGUGGGagggCAGcggcGCCGCAc -3' miRNA: 3'- cCGGUC-GUGCAUCCaua-GUU----UGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 9830 | 0.66 | 0.995095 |
Target: 5'- gGGCCGccGCACGUucgcgagAGG-GUCAAGCgGCc -3' miRNA: 3'- -CCGGU--CGUGCA-------UCCaUAGUUUGgUGu -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 25610 | 0.68 | 0.983468 |
Target: 5'- gGGCCGGCguugcggaacacgGCGgcGGUG--GGGCCGCGc -3' miRNA: 3'- -CCGGUCG-------------UGCauCCAUagUUUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 59024 | 0.68 | 0.979428 |
Target: 5'- aGGCaGGCGCGUcAGGUcgGUCuccgcgcauccGAACCGCGa -3' miRNA: 3'- -CCGgUCGUGCA-UCCA--UAG-----------UUUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 34810 | 0.66 | 0.995867 |
Target: 5'- uGUCAuGCGCGUcgaguGGUAggaCGGGCCACGa -3' miRNA: 3'- cCGGU-CGUGCAu----CCAUa--GUUUGGUGU- -5' |
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24354 | 5' | -50.6 | NC_005264.1 | + | 123612 | 0.66 | 0.99517 |
Target: 5'- cGGCCGGUAUu--GGUGuUCAAguauccggcaGCCGCAg -3' miRNA: 3'- -CCGGUCGUGcauCCAU-AGUU----------UGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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