miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 162667 0.66 0.99517
Target:  5'- cGCCGGCGgguCGUAGGUguacgGUCGGcgcGCUGCGc -3'
miRNA:   3'- cCGGUCGU---GCAUCCA-----UAGUU---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 157255 0.7 0.94559
Target:  5'- cGGCCcucGGCGCGUuggAGGUgGUCu--CCGCAa -3'
miRNA:   3'- -CCGG---UCGUGCA---UCCA-UAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 154738 0.66 0.99517
Target:  5'- cGGCCGGUACcUGuGUAUCGcgUCGCGa -3'
miRNA:   3'- -CCGGUCGUGcAUcCAUAGUuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 153836 0.66 0.995867
Target:  5'- uGUCAuGCGCGUcgaguGGUAggaCGGGCCACGa -3'
miRNA:   3'- cCGGU-CGUGCAu----CCAUa--GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 153802 0.69 0.95817
Target:  5'- cGCUAgGCuCGUGGGUgaGUCuAGACCGCAu -3'
miRNA:   3'- cCGGU-CGuGCAUCCA--UAG-UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 152147 0.66 0.99517
Target:  5'- aGGCCAGCACGga-GUA-CAucGACUugAa -3'
miRNA:   3'- -CCGGUCGUGCaucCAUaGU--UUGGugU- -5'
24354 5' -50.6 NC_005264.1 + 149665 0.74 0.804262
Target:  5'- cGCgCAGCGCGUAGGUcgucGUCGucgucgucgucgcGACCACu -3'
miRNA:   3'- cCG-GUCGUGCAUCCA----UAGU-------------UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 146008 0.69 0.961879
Target:  5'- cGGCguGCGCGUuauGGgcUCGGGCgACu -3'
miRNA:   3'- -CCGguCGUGCAu--CCauAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 141663 1.12 0.006625
Target:  5'- cGGCCAGCACGUAGGUAUCAAACCACAc -3'
miRNA:   3'- -CCGGUCGUGCAUCCAUAGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 139464 0.69 0.97162
Target:  5'- cGGCCAG-GCGUGucuGG-AUCGGACCAUc -3'
miRNA:   3'- -CCGGUCgUGCAU---CCaUAGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 138892 0.7 0.952991
Target:  5'- cGUCGGCGCGUGGGaccuucgaGUCAAacauuccaaguauuGCCACGg -3'
miRNA:   3'- cCGGUCGUGCAUCCa-------UAGUU--------------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 137541 0.71 0.925292
Target:  5'- cGGCCucGGCgACGUGGuagGUCAcACCACAc -3'
miRNA:   3'- -CCGG--UCG-UGCAUCca-UAGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 135170 0.67 0.991367
Target:  5'- aGGCCAGcCGCGUAccucGGUc-CGAgcGCCGCGu -3'
miRNA:   3'- -CCGGUC-GUGCAU----CCAuaGUU--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 132403 0.66 0.993488
Target:  5'- uGGCCgcaGGCACG-AGcUA-CAAGCCGCGg -3'
miRNA:   3'- -CCGG---UCGUGCaUCcAUaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 128856 0.66 0.995095
Target:  5'- gGGCCGccGCACGUucgcgagAGG-GUCAAGCgGCc -3'
miRNA:   3'- -CCGGU--CGUGCA-------UCCaUAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 128119 0.67 0.991367
Target:  5'- uGCCAGCugGggccgaauaUGGGUcuUCGguGACCGCGa -3'
miRNA:   3'- cCGGUCGugC---------AUCCAu-AGU--UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 126896 0.66 0.99648
Target:  5'- cGUCGGCGCGaaacAGGUcUCGcGCUACAu -3'
miRNA:   3'- cCGGUCGUGCa---UCCAuAGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 125634 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 124653 0.72 0.894175
Target:  5'- gGGCC-GCGCGacgcUAGGUGUCc--CCACAg -3'
miRNA:   3'- -CCGGuCGUGC----AUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 123612 0.66 0.99517
Target:  5'- cGGCCGGUAUu--GGUGuUCAAguauccggcaGCCGCAg -3'
miRNA:   3'- -CCGGUCGUGcauCCAU-AGUU----------UGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.