miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 15926 0.69 0.971327
Target:  5'- aGGUguGCGCGUGaguuucgagcgucGGUuugcgCGAGCCACGa -3'
miRNA:   3'- -CCGguCGUGCAU-------------CCAua---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 146008 0.69 0.961879
Target:  5'- cGGCguGCGCGUuauGGgcUCGGGCgACu -3'
miRNA:   3'- -CCGguCGUGCAu--CCauAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 117042 0.69 0.961879
Target:  5'- -aUCAGCGCGgcGGcc-CAGACCGCAa -3'
miRNA:   3'- ccGGUCGUGCauCCauaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 34776 0.69 0.95817
Target:  5'- cGCUAgGCuCGUGGGUgaGUCuAGACCGCAu -3'
miRNA:   3'- cCGGU-CGuGCAUCCA--UAG-UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 153802 0.69 0.95817
Target:  5'- cGCUAgGCuCGUGGGUgaGUCuAGACCGCAu -3'
miRNA:   3'- cCGGU-CGuGCAUCCA--UAG-UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 73065 0.69 0.95817
Target:  5'- cGGCCAGagACGUGGcGUaGUCGGGCuCACu -3'
miRNA:   3'- -CCGGUCg-UGCAUC-CA-UAGUUUG-GUGu -5'
24354 5' -50.6 NC_005264.1 + 138892 0.7 0.952991
Target:  5'- cGUCGGCGCGUGGGaccuucgaGUCAAacauuccaaguauuGCCACGg -3'
miRNA:   3'- cCGGUCGUGCAUCCa-------UAGUU--------------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 67285 0.7 0.95003
Target:  5'- cGCUAGCGCGUcggcuucgaaGGGUAUCGcGGCgGCGc -3'
miRNA:   3'- cCGGUCGUGCA----------UCCAUAGU-UUGgUGU- -5'
24354 5' -50.6 NC_005264.1 + 98476 0.7 0.95003
Target:  5'- cGGCCGGCACGcgcgAGGgcaucuccUCAGcGCUACAg -3'
miRNA:   3'- -CCGGUCGUGCa---UCCau------AGUU-UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 157255 0.7 0.94559
Target:  5'- cGGCCcucGGCGCGUuggAGGUgGUCu--CCGCAa -3'
miRNA:   3'- -CCGG---UCGUGCA---UCCA-UAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 21060 0.7 0.935951
Target:  5'- cGGCCuuAGCGCGUuGGc--CAAGCCAUAu -3'
miRNA:   3'- -CCGG--UCGUGCAuCCauaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 54606 0.7 0.935951
Target:  5'- cGGCCucGGCGCGUGcGGgacAUC-GGCCACGu -3'
miRNA:   3'- -CCGG--UCGUGCAU-CCa--UAGuUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 111726 0.71 0.93075
Target:  5'- cGCCAGCGuCG-AGGcgcgagCAGACCGCAg -3'
miRNA:   3'- cCGGUCGU-GCaUCCaua---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 74643 0.71 0.93075
Target:  5'- cGUCAGCGCGaacccaGGGUG-CAGGCCGCu -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUaGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 137541 0.71 0.925292
Target:  5'- cGGCCucGGCgACGUGGuagGUCAcACCACAc -3'
miRNA:   3'- -CCGG--UCG-UGCAUCca-UAGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 102317 0.71 0.924732
Target:  5'- cGGCCGGCauGCGUAGGUuacUCAcguuguacgaagcGGCCAa- -3'
miRNA:   3'- -CCGGUCG--UGCAUCCAu--AGU-------------UUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 76008 0.71 0.919577
Target:  5'- cGGCgugAGCACGUuccAGGUAUCc-ACCGCGa -3'
miRNA:   3'- -CCGg--UCGUGCA---UCCAUAGuuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 6607 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 125634 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 124653 0.72 0.894175
Target:  5'- gGGCC-GCGCGacgcUAGGUGUCc--CCACAg -3'
miRNA:   3'- -CCGGuCGUGC----AUCCAUAGuuuGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.