miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 8546 0.66 0.994943
Target:  5'- gGGCCAGCAaaagccccaaaaucCagaucUAGGUAUCuccccguauGACCGCAg -3'
miRNA:   3'- -CCGGUCGU--------------Gc----AUCCAUAGu--------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 28867 0.66 0.99438
Target:  5'- cGGCCcGCGCGggcUAGGUuUCAugAACUGCu -3'
miRNA:   3'- -CCGGuCGUGC---AUCCAuAGU--UUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 88692 0.66 0.99438
Target:  5'- aGGCCgaAGCagcuGCGUGGcGUG-CAuGCCGCAu -3'
miRNA:   3'- -CCGG--UCG----UGCAUC-CAUaGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 18903 0.66 0.99438
Target:  5'- cGGCUugGGCugGUAGG---CAAGCCGg- -3'
miRNA:   3'- -CCGG--UCGugCAUCCauaGUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 34130 0.66 0.993488
Target:  5'- uGCCucuggugacgGGCGCGUAGGcuucggGUCGugguACCGCGc -3'
miRNA:   3'- cCGG----------UCGUGCAUCCa-----UAGUu---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 132403 0.66 0.993488
Target:  5'- uGGCCgcaGGCACG-AGcUA-CAAGCCGCGg -3'
miRNA:   3'- -CCGG---UCGUGCaUCcAUaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 102756 0.66 0.993488
Target:  5'- cGCCGGCA-GUAGGcUAggggCGGGCCAg- -3'
miRNA:   3'- cCGGUCGUgCAUCC-AUa---GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 135170 0.67 0.991367
Target:  5'- aGGCCAGcCGCGUAccucGGUc-CGAgcGCCGCGu -3'
miRNA:   3'- -CCGGUC-GUGCAU----CCAuaGUU--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 9092 0.67 0.991367
Target:  5'- uGCCAGCugGggccgaauaUGGGUcuUCGguGACCGCGa -3'
miRNA:   3'- cCGGUCGugC---------AUCCAu-AGU--UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 61723 0.67 0.991367
Target:  5'- uGCCgaacaGGUAuuCGUAGGUGUC-GGCCACu -3'
miRNA:   3'- cCGG-----UCGU--GCAUCCAUAGuUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 128119 0.67 0.991367
Target:  5'- uGCCAGCugGggccgaauaUGGGUcuUCGguGACCGCGa -3'
miRNA:   3'- cCGGUCGugC---------AUCCAu-AGU--UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 27896 0.67 0.990119
Target:  5'- uGGCCAGCgucucgGCGaGGGUGagCGacgacGACCGCGg -3'
miRNA:   3'- -CCGGUCG------UGCaUCCAUa-GU-----UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 77263 0.67 0.987202
Target:  5'- -cCCAGCACGU-GGUG-CAcgguGCCGCGc -3'
miRNA:   3'- ccGGUCGUGCAuCCAUaGUu---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 25610 0.68 0.983468
Target:  5'- gGGCCGGCguugcggaacacgGCGgcGGUG--GGGCCGCGc -3'
miRNA:   3'- -CCGGUCG-------------UGCauCCAUagUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 1172 0.68 0.981636
Target:  5'- uGCCGGCGCGcgauggGGGUAcgcagCGGACCGg- -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUa----GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 120199 0.68 0.981636
Target:  5'- uGCCGGCGCGcgauggGGGUAcgcagCGGACCGg- -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUa----GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 59024 0.68 0.979428
Target:  5'- aGGCaGGCGCGUcAGGUcgGUCuccgcgcauccGAACCGCGa -3'
miRNA:   3'- -CCGgUCGUGCA-UCCA--UAG-----------UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 70100 0.68 0.979428
Target:  5'- uGUCGGCGCGgAGGaccuUAUCGAgcuGCCGCGu -3'
miRNA:   3'- cCGGUCGUGCaUCC----AUAGUU---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 67393 0.68 0.977027
Target:  5'- cGCCGGCGCgGUAGcGUAUU---CCACGa -3'
miRNA:   3'- cCGGUCGUG-CAUC-CAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 139464 0.69 0.97162
Target:  5'- cGGCCAG-GCGUGucuGG-AUCGGACCAUc -3'
miRNA:   3'- -CCGGUCgUGCAU---CCaUAGUUUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.