miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 5' -57.5 NC_005264.1 + 33402 0.66 0.866779
Target:  5'- gGCgaCCGCGGUGAUGU--UGGG-CGAGu -3'
miRNA:   3'- aCG--GGCGUCACUACGcuAUCCgGCUC- -5'
24356 5' -57.5 NC_005264.1 + 23566 0.66 0.866037
Target:  5'- cGCCCacCAcauaaucaucgacGUGAUGaCGAaccUGGGCCGGGa -3'
miRNA:   3'- aCGGGc-GU-------------CACUAC-GCU---AUCCGGCUC- -5'
24356 5' -57.5 NC_005264.1 + 22742 0.66 0.851547
Target:  5'- cUGCCCGguGcUGGgcgaaGCGAUAGcGgCGGGc -3'
miRNA:   3'- -ACGGGCguC-ACUa----CGCUAUC-CgGCUC- -5'
24356 5' -57.5 NC_005264.1 + 152928 0.66 0.843634
Target:  5'- aGCCCGCAGUc--GCGAguccccgaAGGcCCGAu -3'
miRNA:   3'- aCGGGCGUCAcuaCGCUa-------UCC-GGCUc -5'
24356 5' -57.5 NC_005264.1 + 109600 0.66 0.843634
Target:  5'- cGCCCGCGGggcacgGAaagcaaaugGCG-UGGGCgGGGg -3'
miRNA:   3'- aCGGGCGUCa-----CUa--------CGCuAUCCGgCUC- -5'
24356 5' -57.5 NC_005264.1 + 149245 0.66 0.843634
Target:  5'- cUGgCCGguGUGgcGCug-GGGCCGAa -3'
miRNA:   3'- -ACgGGCguCACuaCGcuaUCCGGCUc -5'
24356 5' -57.5 NC_005264.1 + 78687 0.66 0.843634
Target:  5'- -cUCCGUAGUGAUcGCGAUGgucgugcuaacGGCCGuAGc -3'
miRNA:   3'- acGGGCGUCACUA-CGCUAU-----------CCGGC-UC- -5'
24356 5' -57.5 NC_005264.1 + 107024 0.67 0.818788
Target:  5'- gGCaCCGCGGcGAUGUGGaauuuUGGGCgGAa -3'
miRNA:   3'- aCG-GGCGUCaCUACGCU-----AUCCGgCUc -5'
24356 5' -57.5 NC_005264.1 + 16448 0.67 0.792442
Target:  5'- cUGCCCGCGG--GUGUGAacguGGUCGAa -3'
miRNA:   3'- -ACGGGCGUCacUACGCUau--CCGGCUc -5'
24356 5' -57.5 NC_005264.1 + 98432 0.67 0.792442
Target:  5'- gUGCCCGCGGcGucgGCcuu-GGCCGGGc -3'
miRNA:   3'- -ACGGGCGUCaCua-CGcuauCCGGCUC- -5'
24356 5' -57.5 NC_005264.1 + 115530 0.67 0.783364
Target:  5'- aGUCUGCAGU-AUGCGGUcGGGCCc-- -3'
miRNA:   3'- aCGGGCGUCAcUACGCUA-UCCGGcuc -5'
24356 5' -57.5 NC_005264.1 + 56433 0.67 0.783364
Target:  5'- aGCCCGCGGUGcuUGCcGAcgUAGGCgGc- -3'
miRNA:   3'- aCGGGCGUCACu-ACG-CU--AUCCGgCuc -5'
24356 5' -57.5 NC_005264.1 + 104864 0.68 0.773224
Target:  5'- cGCCgCGCGGggacuccGAUGaCGAUAGGCacaagcaCGAGa -3'
miRNA:   3'- aCGG-GCGUCa------CUAC-GCUAUCCG-------GCUC- -5'
24356 5' -57.5 NC_005264.1 + 37096 0.68 0.764815
Target:  5'- gGCCCGCccaaGGUGGUGgGcaggacgAGGgCGAGg -3'
miRNA:   3'- aCGGGCG----UCACUACgCua-----UCCgGCUC- -5'
24356 5' -57.5 NC_005264.1 + 156123 0.68 0.764815
Target:  5'- gGCCCGCccaaGGUGGUGgGcaggacgAGGgCGAGg -3'
miRNA:   3'- aCGGGCG----UCACUACgCua-----UCCgGCUC- -5'
24356 5' -57.5 NC_005264.1 + 81641 0.68 0.764815
Target:  5'- aUGCCuCGCGGUGGUGaug-GGGCUGu- -3'
miRNA:   3'- -ACGG-GCGUCACUACgcuaUCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 92029 0.68 0.745803
Target:  5'- cGCCCGCGaaagaaauGUGGagGuCGGUGGGCCGc- -3'
miRNA:   3'- aCGGGCGU--------CACUa-C-GCUAUCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 94675 0.68 0.726399
Target:  5'- gUGCCCGCcGUGAUGCaGAUGuuGCaCGAa -3'
miRNA:   3'- -ACGGGCGuCACUACG-CUAUc-CG-GCUc -5'
24356 5' -57.5 NC_005264.1 + 1008 0.69 0.716572
Target:  5'- cGCCCGU-GUGGUGgGGgggcagGGGCCGu- -3'
miRNA:   3'- aCGGGCGuCACUACgCUa-----UCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 18102 0.69 0.696714
Target:  5'- aUGCCgGCAGaUGgcGCGAgAGGCUaaGAGa -3'
miRNA:   3'- -ACGGgCGUC-ACuaCGCUaUCCGG--CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.