Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24357 | 5' | -50.6 | NC_005264.1 | + | 16764 | 0.68 | 0.970411 |
Target: 5'- gACCCGCGc-GGGGGCGCGCuGUUCgGg -3' miRNA: 3'- aUGGGCGUuuUUUUUGCGCG-CAGGgU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 29200 | 0.68 | 0.970411 |
Target: 5'- gGCgUGCAAGuguuGCGUGCGUCaCCGa -3' miRNA: 3'- aUGgGCGUUUuuuuUGCGCGCAG-GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 125788 | 0.68 | 0.970411 |
Target: 5'- cUGCCCGUAGuacccAAUGcCGUGUCCCc -3' miRNA: 3'- -AUGGGCGUUuuuu-UUGC-GCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 93163 | 0.68 | 0.970411 |
Target: 5'- --aCCGCGGAGAAccaaggccccAGCGcCGCGUgCCCGa -3' miRNA: 3'- augGGCGUUUUUU----------UUGC-GCGCA-GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 59792 | 0.68 | 0.973324 |
Target: 5'- cGCCCGCAGGGGGcGCGUaGCG-CaCCAu -3' miRNA: 3'- aUGGGCGUUUUUUuUGCG-CGCaG-GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 14875 | 0.68 | 0.973324 |
Target: 5'- gGCCaUGUAcacuAGACGCGCGUCCa- -3' miRNA: 3'- aUGG-GCGUuuuuUUUGCGCGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 154229 | 0.68 | 0.975763 |
Target: 5'- cGCCUaccggugcgcguuGCGGAGGAAcACGCGCGUCUg- -3' miRNA: 3'- aUGGG-------------CGUUUUUUU-UGCGCGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 31698 | 0.68 | 0.976024 |
Target: 5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3' miRNA: 3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 14348 | 0.68 | 0.976024 |
Target: 5'- cGCCaaCGCGAcca----GCGCGUCCCAu -3' miRNA: 3'- aUGG--GCGUUuuuuuugCGCGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 150724 | 0.68 | 0.976024 |
Target: 5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3' miRNA: 3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 56079 | 0.68 | 0.976024 |
Target: 5'- cGCCCGCu-----GACGCcGCGUCUUg -3' miRNA: 3'- aUGGGCGuuuuuuUUGCG-CGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 84863 | 0.68 | 0.978035 |
Target: 5'- cGCCCGCuccggu-ACGCGCGgcgCCg- -3' miRNA: 3'- aUGGGCGuuuuuuuUGCGCGCa--GGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 133498 | 0.67 | 0.98272 |
Target: 5'- gUACCCgGCAGAcgucguagccgcaGGAGGCGCuGUGUCCa- -3' miRNA: 3'- -AUGGG-CGUUU-------------UUUUUGCG-CGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 78662 | 0.67 | 0.98272 |
Target: 5'- gUACgCCGCAGAAGuaaacagguccGGCGCGCGcgcugcgaccacuUCCCGg -3' miRNA: 3'- -AUG-GGCGUUUUUu----------UUGCGCGC-------------AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 155985 | 0.67 | 0.982923 |
Target: 5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3' miRNA: 3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 36958 | 0.67 | 0.982923 |
Target: 5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3' miRNA: 3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 45566 | 0.67 | 0.984852 |
Target: 5'- cGCCCGUGuc---GGCGCGCacgaGUCCCu -3' miRNA: 3'- aUGGGCGUuuuuuUUGCGCG----CAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 51357 | 0.67 | 0.984852 |
Target: 5'- --gCCGaCAGGAAGGGCGCaGCGUCUg- -3' miRNA: 3'- augGGC-GUUUUUUUUGCG-CGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 45675 | 0.67 | 0.984852 |
Target: 5'- gGCCCGCuucauguGAGAGuAAgGCGCGaaguugCCCAg -3' miRNA: 3'- aUGGGCGu------UUUUU-UUgCGCGCa-----GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 80628 | 0.67 | 0.984852 |
Target: 5'- gGCCC-CGAGGAcgauGGACGCGCGg-CCAc -3' miRNA: 3'- aUGGGcGUUUUU----UUUGCGCGCagGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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