Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24357 | 5' | -50.6 | NC_005264.1 | + | 64081 | 0.71 | 0.910552 |
Target: 5'- gGCCUGUggGuucucuCGCGCGUCCUc -3' miRNA: 3'- aUGGGCGuuUuuuuu-GCGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 71828 | 0.71 | 0.922568 |
Target: 5'- cGCCCGCGGGGucgcgaauAACGaCGCGUCgCGg -3' miRNA: 3'- aUGGGCGUUUUuu------UUGC-GCGCAGgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 148464 | 0.7 | 0.933544 |
Target: 5'- cGCCCGCGAGGGAAugaaGCGC-UCCa- -3' miRNA: 3'- aUGGGCGUUUUUUUug--CGCGcAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 34429 | 0.7 | 0.938145 |
Target: 5'- gACCCGCGAGcacuuucGAGGAgGCGaucaagcuCGUCCCGc -3' miRNA: 3'- aUGGGCGUUU-------UUUUUgCGC--------GCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 98568 | 0.7 | 0.938643 |
Target: 5'- gUGCgCCGCAAGAuGAACG-GCG-CCCGc -3' miRNA: 3'- -AUG-GGCGUUUUuUUUGCgCGCaGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 159526 | 0.7 | 0.938643 |
Target: 5'- cGCuCCGCuugcacGGCGCGCGaUCCCGc -3' miRNA: 3'- aUG-GGCGuuuuuuUUGCGCGC-AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 46838 | 0.7 | 0.945348 |
Target: 5'- aUACCCGaCAGAGGGcgacgcacacggccuGGCGUucaGCGUCCCu -3' miRNA: 3'- -AUGGGC-GUUUUUU---------------UUGCG---CGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 55155 | 0.7 | 0.948068 |
Target: 5'- gGCCCGCAAAuccacccuGAAC-CGCGUCUa- -3' miRNA: 3'- aUGGGCGUUUuu------UUUGcGCGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 121763 | 0.7 | 0.948068 |
Target: 5'- gGCCCGUcuucuAGGuuuAACgGCGCGUCCCc -3' miRNA: 3'- aUGGGCGu----UUUuu-UUG-CGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 77053 | 0.7 | 0.948068 |
Target: 5'- gACCCG--GAAGAGGCGCGCGagCUAc -3' miRNA: 3'- aUGGGCguUUUUUUUGCGCGCagGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 27265 | 0.69 | 0.952399 |
Target: 5'- cACCCGUAGucgcGAGcGACGCGCGgcuUCUCGa -3' miRNA: 3'- aUGGGCGUU----UUUuUUGCGCGC---AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 152928 | 0.69 | 0.952399 |
Target: 5'- aGCCCGCAGu-----CGCGaGUCCCc -3' miRNA: 3'- aUGGGCGUUuuuuuuGCGCgCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 143772 | 0.69 | 0.952399 |
Target: 5'- cUAUgCGCG--GGAAGCGCGCuUCCCGc -3' miRNA: 3'- -AUGgGCGUuuUUUUUGCGCGcAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 111422 | 0.69 | 0.960318 |
Target: 5'- gGCCUGcCGGAAAccAUGCGCGUUCUg -3' miRNA: 3'- aUGGGC-GUUUUUuuUGCGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 69357 | 0.69 | 0.963914 |
Target: 5'- gGCCCGUuugu--GGCGCGUGUCgCGu -3' miRNA: 3'- aUGGGCGuuuuuuUUGCGCGCAGgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 6889 | 0.69 | 0.963914 |
Target: 5'- -gUCCGCGAGc----CGCGCaGUCCCAg -3' miRNA: 3'- auGGGCGUUUuuuuuGCGCG-CAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 11396 | 0.69 | 0.967276 |
Target: 5'- -uCCUGCAGAGGGAGUG-GCGUUCCAg -3' miRNA: 3'- auGGGCGUUUUUUUUGCgCGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 130423 | 0.69 | 0.967276 |
Target: 5'- -uCCUGCAGAGGGAGUG-GCGUUCCAg -3' miRNA: 3'- auGGGCGUUUUUUUUGCgCGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 8593 | 0.68 | 0.970411 |
Target: 5'- --aCCGCAGAc---GCGCGUGUUCCu -3' miRNA: 3'- augGGCGUUUuuuuUGCGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 29200 | 0.68 | 0.970411 |
Target: 5'- gGCgUGCAAGuguuGCGUGCGUCaCCGa -3' miRNA: 3'- aUGgGCGUUUuuuuUGCGCGCAG-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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