miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 4678 0.66 0.993172
Target:  5'- aUACCUGCGucggggcGAGugGCGcCGCGUCCaCGa -3'
miRNA:   3'- -AUGGGCGUu------UUUuuUGC-GCGCAGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 45667 0.66 0.993172
Target:  5'- cGCCaagCGCAGuGAAgcacGugGCGCGaUCCCGg -3'
miRNA:   3'- aUGG---GCGUUuUUU----UugCGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 123705 0.66 0.993172
Target:  5'- aUACCUGCGucggggcGAGugGCGcCGCGUCCaCGa -3'
miRNA:   3'- -AUGGGCGUu------UUUuuUGC-GCGCAGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 33850 0.66 0.993072
Target:  5'- cGCgCCGCGGcagagcuGAAGAACGUggaGCGUCCg- -3'
miRNA:   3'- aUG-GGCGUU-------UUUUUUGCG---CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 155852 0.66 0.992125
Target:  5'- cGCCCGCAGGGAcAAcccCGCGCcaacUCUCAu -3'
miRNA:   3'- aUGGGCGUUUUUuUU---GCGCGc---AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 84445 0.66 0.992125
Target:  5'- aGCCCGCu-GAGAcACGCGCGaCgUAu -3'
miRNA:   3'- aUGGGCGuuUUUUuUGCGCGCaGgGU- -5'
24357 5' -50.6 NC_005264.1 + 159135 0.66 0.992125
Target:  5'- cGCCCGCGGcAAGuACuGUGCG-CCCu -3'
miRNA:   3'- aUGGGCGUUuUUUuUG-CGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 53846 0.66 0.992125
Target:  5'- aGCUCGUcguucaaggcuAGGAGAGACGCGuCGUaCCCc -3'
miRNA:   3'- aUGGGCG-----------UUUUUUUUGCGC-GCA-GGGu -5'
24357 5' -50.6 NC_005264.1 + 87438 0.66 0.992014
Target:  5'- cUGCCCGCGgccgcgcAGAcgGugGCGCG-CaCCAc -3'
miRNA:   3'- -AUGGGCGU-------UUUuuUugCGCGCaG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 152727 0.66 0.990955
Target:  5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 138798 0.66 0.990955
Target:  5'- -gUCCGCcauAGAGACGUGCGUCaCGa -3'
miRNA:   3'- auGGGCGuuuUUUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 157293 0.66 0.990955
Target:  5'- cACCUGCGAAGAGAAacccgcucCGCGCGagacgCCgCGg -3'
miRNA:   3'- aUGGGCGUUUUUUUU--------GCGCGCa----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 33701 0.66 0.990955
Target:  5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 58497 0.66 0.990955
Target:  5'- aUGCgCGCAA---GAGCGCgguGCGUCCUc -3'
miRNA:   3'- -AUGgGCGUUuuuUUUGCG---CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 139294 0.66 0.990955
Target:  5'- cAUCCGCGGu---AGCGCguaGCGUUCCGc -3'
miRNA:   3'- aUGGGCGUUuuuuUUGCG---CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 29892 0.66 0.990955
Target:  5'- cUugCCGCGAAG---GCGUGCGgcgcuacCCCGu -3'
miRNA:   3'- -AugGGCGUUUUuuuUGCGCGCa------GGGU- -5'
24357 5' -50.6 NC_005264.1 + 161470 0.67 0.99019
Target:  5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3'
miRNA:   3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 42443 0.67 0.99019
Target:  5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3'
miRNA:   3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 153452 0.67 0.989652
Target:  5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3'
miRNA:   3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 158254 0.67 0.989652
Target:  5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3'
miRNA:   3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.